RchiOBHm_Chr4g0414791

Glycerol-3-phosphate acyltransferase 3-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Forward (+)
39340957 .. 39341859
903 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 348 bp
ATGTATCTGGTTCAATCGTTCAGAATCAAAGGATCGGGAAATTGTTGCGAAGAATTATATCTCTTTTTCAGATTAAGGGATCATGTGGTGGGGCCTGACAATAACCCTCTCCTTATATTTCCCGAAGGAACTTGTGTAAACAATCACTACACTGTTATGTTTAAGAAGGACATATATGTACTGAATTTGTTTCTATTAAGAAGTTCTTGGTCTTTGTCGTTTGATCTAACTTTTTCTTTTATTTGTTTATATGTTGAGGGTGCATTTGAGCTTGGCTGCTCAGTTTTCCCTGTCGCAATTAAGTACAATAAAATTTTCGTTGATGCATTCTGGAACAGCAGAAAGTAA

Protein Analysis

115

Amino Acids

13.43

Weight (kDa)

7.61

Isoelectric Point (pI)

35.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 40, 87
AcsI RAATTY 2 cut(s) 184, 312
AfaI GTAC 2 cut(s) 180, 305
AgsI TTSAA 1 cut(s) 14
AluBI AGCT 1 cut(s) 271
AluI AGCT 1 cut(s) 271
AlwI GGATC 2 cut(s) 40, 87
AoxI GGCC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 276
ApoI RAATTY 2 cut(s) 184, 312
AspS9I GGNCC 1 cut(s) 92
BbvI GCAGC 1 cut(s) 263
BisI GCNGC 1 cut(s) 277
BlsI GCNGC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 93
BmsI GCATC 1 cut(s) 313
BseMII CTCAG 1 cut(s) 294
BseXI GCAGC 1 cut(s) 263
BshFI GGCC 1 cut(s) 94
BsmI GAATGC 1 cut(s) 326
BsnI GGCC 1 cut(s) 94
Bsp143I GATC 3 cut(s) 32, 79, 223
BspANI GGCC 1 cut(s) 94
BspCNI CTCAG 1 cut(s) 293
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 2 cut(s) 40, 87
BssMI GATC 3 cut(s) 32, 79, 223
Bst4CI ACNGT 1 cut(s) 154
BstDEI CTNAG 1 cut(s) 280
BstKTI GATC 3 cut(s) 35, 82, 226
BstMBI GATC 3 cut(s) 32, 79, 223
BstV1I GCAGC 1 cut(s) 263
BsuRI GGCC 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 150
Cfr13I GGNCC 1 cut(s) 92
Csp6I GTAC 2 cut(s) 179, 304
CviAII CATG 1 cut(s) 83
CviJI RGCY 3 cut(s) 94, 271, 276
CviKI_1 RGCY 3 cut(s) 94, 271, 276
CviQI GTAC 2 cut(s) 179, 304
DdeI CTNAG 1 cut(s) 280
DpnI GATC 3 cut(s) 34, 81, 225
DpnII GATC 3 cut(s) 32, 79, 223
EcoO109I RGGNCCY 1 cut(s) 92
EcoT22I ATGCAT 1 cut(s) 328
FaeI CATG 1 cut(s) 86
FaiI YATR 9 cut(s) 58, 84, 116, 158, 173, 175, 177, 250, 252
FalI AAGNNNNNCTT 2 cut(s) 190, 222
FatI CATG 1 cut(s) 82
Fnu4HI GCNGC 1 cut(s) 277
Fsp4HI GCNGC 1 cut(s) 277
GluI GCNGC 1 cut(s) 277
HaeIII GGCC 1 cut(s) 94
Hin1II CATG 1 cut(s) 86
HinfI GANTC 1 cut(s) 24
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 2 cut(s) 23, 71
Hpy188III TCNNGA 3 cut(s) 36, 122, 331
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 2 cut(s) 119, 160
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 2 cut(s) 263, 326
HpyF3I CTNAG 1 cut(s) 280
Hsp92II CATG 1 cut(s) 86
Kzo9I GATC 3 cut(s) 32, 79, 223
LpnPI CCDG 3 cut(s) 108, 303, 316
Lsp1109I GCAGC 1 cut(s) 263
LweI GCATC 1 cut(s) 313
MalI GATC 3 cut(s) 34, 81, 225
MboI GATC 3 cut(s) 32, 79, 223
MboII GAAGA 1 cut(s) 62
MluCI AATT 5 cut(s) 40, 53, 184, 297, 312
MnlI CCTC 2 cut(s) 117, 250
Mph1103I ATGCAT 1 cut(s) 328
MseI TTAA 4 cut(s) 74, 162, 197, 300
MslI CAYNNNNRTG 1 cut(s) 155
Mva1269I GAATGC 1 cut(s) 326
NdeII GATC 3 cut(s) 32, 79, 223
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 1 cut(s) 93
NsiI ATGCAT 1 cut(s) 328
PctI GAATGC 1 cut(s) 326
PfeI GAWTC 1 cut(s) 24
PkrI GCNGC 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 92
RsaI GTAC 2 cut(s) 180, 305
RsaNI GTAC 2 cut(s) 179, 304
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 4 cut(s) 74, 162, 197, 300
SatI GCNGC 1 cut(s) 277
Sau3AI GATC 3 cut(s) 32, 79, 223
Sau96I GGNCC 1 cut(s) 92
SetI ASST 1 cut(s) 273
SfaNI GCATC 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 155
Sse9I AATT 5 cut(s) 40, 53, 184, 297, 312
TaaI ACNGT 1 cut(s) 154
TasI AATT 5 cut(s) 40, 53, 184, 297, 312
TatI WGTACW 2 cut(s) 178, 303
TfiI GAWTC 1 cut(s) 24
Tru1I TTAA 4 cut(s) 74, 162, 197, 300
Tru9I TTAA 4 cut(s) 74, 162, 197, 300
TscAI CASTG 1 cut(s) 157
TseI GCWGC 1 cut(s) 276
TspRI CASTG 1 cut(s) 157
XapI RAATTY 2 cut(s) 184, 312
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.