Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

39486773 .. 39487151

Gene Structure 379 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGCTTGTTGCTTTTAGGCATTCGTCTTGGCTGCTCATCATCTCATTTGCTGTTCAACGAAGGTATGCTAGCTTCTTTATCATCGATCTTTGTCATCTCAGTACCATCAAGATTGCAATACTGCTCATAGCAAAAGTTTTTACAGTACGTTCTTTGGGTCTTCTTATGGCTTCACTGGCACATGGAAGGAAGCTCTTGAATGGGCTTGTTATTTCGCTTTTGCTTCCATGTTTGATATTCTCTCAACTCAGACAAGCAATCATTGGGGAGAAAATTCTCGAGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

95

Amino Acids

10.75

Weight (kDa)

10.53

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	42 - 95	3.1e-06	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	273
AfaI	GTAC	2 cut(s)	103, 147
AgsI	TTSAA	2 cut(s)	56, 199
AluBI	AGCT	2 cut(s)	72, 193
AluI	AGCT	2 cut(s)	72, 193
Ama87I	CYCGRG	1 cut(s)	278
ApeKI	GCWGC	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	273
AsuNHI	GCTAGC	1 cut(s)	68
AvaI	CYCGRG	1 cut(s)	278
BarI	GAAGNNNNNNTAC	2 cut(s)	56, 88
BbsI	GAAGAC	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	69
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
BmeT110I	CYCGRG	1 cut(s)	278
BmtI	GCTAGC	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	152
Bsa29I	ATCGAT	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	180
BseCI	ATCGAT	1 cut(s)	84
BseMII	CTCAG	2 cut(s)	112, 262
BseNI	ACTGG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	18
BshVI	ATCGAT	1 cut(s)	84
BsiHKCI	CYCGRG	1 cut(s)	278
BsmI	GAATGC	1 cut(s)	19
BsoBI	CYCGRG	1 cut(s)	278
Bsp143I	GATC	1 cut(s)	85
BspCNI	CTCAG	2 cut(s)	111, 261
BspDI	ATCGAT	1 cut(s)	84
BspOI	GCTAGC	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	180
BssMI	GATC	1 cut(s)	85
Bst4CI	ACNGT	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	70
BstDEI	CTNAG	2 cut(s)	98, 248
BstKTI	GATC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	152
Bsu15I	ATCGAT	1 cut(s)	84
BsuTUI	ATCGAT	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	173
Cac8I	GCNNGC	1 cut(s)	70
ClaI	ATCGAT	1 cut(s)	84
Csp6I	GTAC	2 cut(s)	102, 146
CviAII	CATG	2 cut(s)	182, 228
CviJI	RGCY	5 cut(s)	31, 72, 170, 193, 205
CviKI_1	RGCY	5 cut(s)	31, 72, 170, 193, 205
CviQI	GTAC	2 cut(s)	102, 146
DdeI	CTNAG	2 cut(s)	98, 248
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
Eco88I	CYCGRG	1 cut(s)	278
FaeI	CATG	2 cut(s)	185, 231
FaiI	YATR	5 cut(s)	66, 128, 167, 183, 229
FatI	CATG	2 cut(s)	181, 227
Fnu4HI	GCNGC	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	32
FspBI	CTAG	1 cut(s)	69
GluI	GCNGC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	185, 231
Hpy188I	TCNGA	1 cut(s)	251
Hpy188III	TCNNGA	3 cut(s)	109, 196, 278
HpyAV	CCTTC	2 cut(s)	54, 180
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	2 cut(s)	98, 248
HpySE526I	ACGT	1 cut(s)	148
Hsp92II	CATG	2 cut(s)	185, 231
Kzo9I	GATC	1 cut(s)	85
LpnPI	CCDG	1 cut(s)	161
Lsp1109I	GCAGC	1 cut(s)	18
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	1 cut(s)	148
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	1 cut(s)	152
MluCI	AATT	1 cut(s)	273
Mva1269I	GAATGC	1 cut(s)	19
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	1 cut(s)	85
NheI	GCTAGC	1 cut(s)	68
NlaIII	CATG	2 cut(s)	185, 231
PaeR7I	CTCGAG	1 cut(s)	278
PctI	GAATGC	1 cut(s)	19
PkrI	GCNGC	1 cut(s)	33
RsaI	GTAC	2 cut(s)	103, 147
RsaNI	GTAC	2 cut(s)	102, 146
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	1 cut(s)	85
SetI	ASST	4 cut(s)	65, 74, 151, 195
Sfr274I	CTCGAG	1 cut(s)	278
SlaI	CTCGAG	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	1 cut(s)	273
SspMI	CTAG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	151
TaqI	TCGA	2 cut(s)	84, 279
TasI	AATT	1 cut(s)	273
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	1 cut(s)	31
TspRI	CASTG	1 cut(s)	180
XapI	RAATTY	1 cut(s)	273
XhoI	CTCGAG	1 cut(s)	278
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.