RchiOBHm_Chr4g0416121

60s ribosomal protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Reverse (-)
41007093 .. 41007574
482 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 183 bp
ATGTTGGCTGTGAAGAAAAACAAGAAGACCCATGAGTCTATCAACAACAGGCTCGGTCTCGTCATGAAGAGTGGCAAGTACATTTTGGGCCTACAAGACAATCATCAACACTCTTCGAAGTTGATTATAATCTCGAACAATTGCCCTCCTCTAAGAAAATCAGAGATCGAGTACTGCTCTTGA

Protein Analysis

60

Amino Acids

6.82

Weight (kDa)

9.7

Isoelectric Point (pI)

51.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 128
AasI GACNNNNNNGTC 1 cut(s) 34
AfaI GTAC 2 cut(s) 80, 173
Alw26I GTCTC 1 cut(s) 62
AoxI GGCC 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 88
AsuII TTCGAA 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 62
BmcAI AGTACT 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 88
BpiI GAAGAC 1 cut(s) 32
BplI GAGNNNNNCTC 1 cut(s) 161
Bpu14I TTCGAA 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 128
BsaI GGTCTC 1 cut(s) 62
Bse8I GATNNNNATC 1 cut(s) 128
BseJI GATNNNNATC 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 138
BshFI GGCC 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 62
BsnI GGCC 1 cut(s) 90
Bso31I GGTCTC 1 cut(s) 62
Bsp119I TTCGAA 1 cut(s) 116
Bsp143I GATC 1 cut(s) 165
BspANI GGCC 1 cut(s) 90
BspHI TCATGA 1 cut(s) 63
BspT104I TTCGAA 1 cut(s) 116
BspTNI GGTCTC 1 cut(s) 62
BssMI GATC 1 cut(s) 165
Bst6I CTCTTC 2 cut(s) 62, 118
BstBI TTCGAA 1 cut(s) 116
BstDEI CTNAG 1 cut(s) 152
BstKTI GATC 1 cut(s) 168
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 1 cut(s) 165
BstV2I GAAGAC 1 cut(s) 32
BsuRI GGCC 1 cut(s) 90
CciI TCATGA 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 88
Csp6I GTAC 2 cut(s) 79, 172
CviAII CATG 2 cut(s) 32, 64
CviJI RGCY 3 cut(s) 8, 52, 90
CviKI_1 RGCY 3 cut(s) 8, 52, 90
CviQI GTAC 2 cut(s) 79, 172
DdeI CTNAG 1 cut(s) 152
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
DrdI GACNNNNNNGTC 1 cut(s) 34
DseDI GACNNNNNNGTC 1 cut(s) 34
Eam1104I CTCTTC 2 cut(s) 62, 118
EarI CTCTTC 2 cut(s) 62, 118
Eco31I GGTCTC 1 cut(s) 62
FaeI CATG 2 cut(s) 35, 67
FaiI YATR 3 cut(s) 33, 65, 128
FatI CATG 2 cut(s) 31, 63
HaeIII GGCC 1 cut(s) 90
Hin1II CATG 2 cut(s) 35, 67
HinfI GANTC 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 3 cut(s) 64, 133, 180
HpyF3I CTNAG 1 cut(s) 152
Hsp92II CATG 2 cut(s) 35, 67
Kzo9I GATC 1 cut(s) 165
LpnPI CCDG 1 cut(s) 34
MalI GATC 1 cut(s) 167
MboI GATC 1 cut(s) 165
MboII GAAGA 4 cut(s) 25, 37, 79, 105
MfeI CAATTG 1 cut(s) 139
MluCI AATT 1 cut(s) 139
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 2 cut(s) 156, 159
MunI CAATTG 1 cut(s) 139
NdeII GATC 1 cut(s) 165
NlaIII CATG 2 cut(s) 35, 67
NspV TTCGAA 1 cut(s) 116
PagI TCATGA 1 cut(s) 63
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PsiI TTATAA 1 cut(s) 128
PspPI GGNCC 1 cut(s) 88
RsaI GTAC 2 cut(s) 80, 173
RsaNI GTAC 2 cut(s) 79, 172
Sau3AI GATC 1 cut(s) 165
Sau96I GGNCC 1 cut(s) 88
ScaI AGTACT 1 cut(s) 173
SchI GAGTC 1 cut(s) 44
SfuI TTCGAA 1 cut(s) 116
SgeI CNNG 9 cut(s) 34, 44, 61, 65, 71, 76, 88, 107, 145
Sse9I AATT 1 cut(s) 139
TaqI TCGA 3 cut(s) 116, 134, 168
TaqII GACCGA 1 cut(s) 44
TasI AATT 1 cut(s) 139
TatI WGTACW 2 cut(s) 78, 171
TspDTI ATGAA 1 cut(s) 80
ZrmI AGTACT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.