RchiOBHm_Chr4g0416661

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Reverse (-)
41717000 .. 41718438
1439 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 393 bp
ATGATTCTAGTGGCATTGGTGCTGGTTACTTTGTTATGTTGTTCACCAAGGGGAACATGGCTCAGAGGGGTTTTTAAACTTTGCCTTTGTTTTTTATGTGGAGATGAGGTACAGATGGACTTGGAGTGTTTCAAAGTTGTGGTGATCTTTGTGTTCGTTGGGAGGGAGGAGGGTTCAATTAAAAACCTGTTACGTACTCTGTTAGTCATCGACTTGGTTGATGAGTGCATCATTCAGATCCGGTCTAGGCCGGTGGTGGCACCACCAAACTTCTTCATCAAAATAGGGAAAAAGGATGGGGCGAGGGAGTATGCATGGCATGATGGCAAGAATTCACCTAGGATGCTGGAGTTGCTTCTGCTTGAGGCTTTAACATTATCAGTACACTTGTAG

Protein Analysis

130

Amino Acids

14.69

Weight (kDa)

7.56

Isoelectric Point (pI)

31.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 259
AclWI GGATC 1 cut(s) 232
AcsI RAATTY 1 cut(s) 331
AfaI GTAC 3 cut(s) 111, 196, 384
AgsI TTSAA 2 cut(s) 133, 177
AlwI GGATC 1 cut(s) 232
AoxI GGCC 1 cut(s) 248
ApoI RAATTY 1 cut(s) 331
AspA2I CCTAGG 1 cut(s) 338
AsuHPI GGTGA 3 cut(s) 36, 154, 327
AvrII CCTAGG 1 cut(s) 338
BanI GGYRCC 1 cut(s) 259
BccI CCATC 3 cut(s) 109, 290, 317
BfaI CTAG 3 cut(s) 8, 246, 339
BlnI CCTAGG 1 cut(s) 338
BmiI GGNNCC 1 cut(s) 261
BmsI GCATC 2 cut(s) 237, 333
BpmI CTGGAG 1 cut(s) 368
BpuEI CTTGAG 1 cut(s) 383
BsaAI YACGTR 1 cut(s) 194
BsaJI CCNNGG 2 cut(s) 47, 338
BsaWI WCCGGW 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bse118I RCCGGY 1 cut(s) 250
BseDI CCNNGG 2 cut(s) 47, 338
BseGI GGATG 2 cut(s) 301, 348
BseMII CTCAG 1 cut(s) 76
BseRI GAGGAG 1 cut(s) 182
BshFI GGCC 1 cut(s) 250
BshNI GGYRCC 1 cut(s) 259
BsiSI CCGG 2 cut(s) 241, 251
BsnI GGCC 1 cut(s) 250
Bsp143I GATC 2 cut(s) 144, 237
BspANI GGCC 1 cut(s) 250
BspCNI CTCAG 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 261
BspPI GGATC 1 cut(s) 232
BspT107I GGYRCC 1 cut(s) 259
BsrFI RCCGGY 1 cut(s) 250
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 2 cut(s) 47, 338
BssMI GATC 2 cut(s) 144, 237
BssT1I CCWWGG 2 cut(s) 47, 338
BstBAI YACGTR 1 cut(s) 194
BstDEI CTNAG 1 cut(s) 62
BstF5I GGATG 2 cut(s) 301, 348
BstKTI GATC 2 cut(s) 147, 240
BstMBI GATC 2 cut(s) 144, 237
BstMWI GCNNNNNNNGC 1 cut(s) 352
BstSNI TACGTA 1 cut(s) 194
BstX2I RGATCY 1 cut(s) 237
BstYI RGATCY 1 cut(s) 237
BsuRI GGCC 1 cut(s) 250
BtsCI GGATG 2 cut(s) 301, 348
Cfr10I RCCGGY 1 cut(s) 250
Csp6I GTAC 3 cut(s) 110, 195, 383
CviAII CATG 3 cut(s) 57, 315, 320
CviJI RGCY 3 cut(s) 61, 250, 368
CviKI_1 RGCY 3 cut(s) 61, 250, 368
CviQI GTAC 3 cut(s) 110, 195, 383
DdeI CTNAG 1 cut(s) 62
DpnI GATC 2 cut(s) 146, 239
DpnII GATC 2 cut(s) 144, 237
DraI TTTAAA 1 cut(s) 76
Eco105I TACGTA 1 cut(s) 194
Eco130I CCWWGG 2 cut(s) 47, 338
EcoRI GAATTC 1 cut(s) 331
EcoT14I CCWWGG 2 cut(s) 47, 338
EcoT22I ATGCAT 1 cut(s) 316
ErhI CCWWGG 2 cut(s) 47, 338
FaeI CATG 3 cut(s) 60, 318, 323
FaiI YATR 6 cut(s) 37, 58, 97, 312, 316, 321
FatI CATG 3 cut(s) 56, 314, 319
FokI GGATG 2 cut(s) 308, 355
FspBI CTAG 3 cut(s) 8, 246, 339
GsuI CTGGAG 1 cut(s) 368
HaeIII GGCC 1 cut(s) 250
HapII CCGG 2 cut(s) 241, 251
Hin1II CATG 3 cut(s) 60, 318, 323
HinfI GANTC 1 cut(s) 4
HpaII CCGG 2 cut(s) 241, 251
HphI GGTGA 3 cut(s) 36, 154, 327
Hpy166II GTNNAC 2 cut(s) 44, 385
Hpy188I TCNGA 2 cut(s) 65, 237
Hpy8I GTNNAC 2 cut(s) 44, 385
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 2 cut(s) 228, 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 352
HpyF3I CTNAG 1 cut(s) 62
HpySE526I ACGT 1 cut(s) 193
Hsp92II CATG 3 cut(s) 60, 318, 323
Kzo9I GATC 2 cut(s) 144, 237
LpnPI CCDG 5 cut(s) 8, 200, 254, 264, 332
LweI GCATC 2 cut(s) 237, 333
MaeI CTAG 3 cut(s) 8, 246, 339
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 2 cut(s) 25, 189
MalI GATC 2 cut(s) 146, 239
MboI GATC 2 cut(s) 144, 237
MboII GAAGA 1 cut(s) 265
MflI RGATCY 1 cut(s) 237
MluCI AATT 2 cut(s) 177, 331
MnlI CCTC 7 cut(s) 59, 100, 156, 160, 163, 297, 358
Mph1103I ATGCAT 1 cut(s) 316
MseI TTAA 3 cut(s) 75, 180, 371
MspI CCGG 2 cut(s) 241, 251
MwoI GCNNNNNNNGC 1 cut(s) 352
NdeII GATC 2 cut(s) 144, 237
NlaIII CATG 3 cut(s) 60, 318, 323
NlaIV GGNNCC 1 cut(s) 261
NsiI ATGCAT 1 cut(s) 316
PfeI GAWTC 1 cut(s) 4
Ppu21I YACGTR 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 261
PsuI RGATCY 1 cut(s) 237
RsaI GTAC 3 cut(s) 111, 196, 384
RsaNI GTAC 3 cut(s) 110, 195, 383
SaqAI TTAA 3 cut(s) 75, 180, 371
Sau3AI GATC 2 cut(s) 144, 237
SetI ASST 4 cut(s) 111, 189, 196, 340
SfaNI GCATC 2 cut(s) 237, 333
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SnaBI TACGTA 1 cut(s) 194
Sse9I AATT 2 cut(s) 177, 331
SspMI CTAG 3 cut(s) 8, 246, 339
StyI CCWWGG 2 cut(s) 47, 338
TaiI ACGT 1 cut(s) 196
TaqI TCGA 1 cut(s) 210
TasI AATT 2 cut(s) 177, 331
TatI WGTACW 1 cut(s) 382
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 3 cut(s) 75, 180, 371
Tru9I TTAA 3 cut(s) 75, 180, 371
TspDTI ATGAA 1 cut(s) 265
XapI RAATTY 1 cut(s) 331
XcmI CCANNNNNNNNNTGG 1 cut(s) 54
XmaJI CCTAGG 1 cut(s) 338
XspI CTAG 3 cut(s) 8, 246, 339
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.