RchiOBHm_Chr4g0417181

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Forward (+)
42465535 .. 42466860
1326 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 279 bp
ATGGGGTTTGATCTTGAATCTGTTGCAGAGGCAACCTCAGGGGCCATTGGAGCTCTGGTCAGCACCACCATCTTGTACCCACTTGATACCTGCAAGACCAAATACCAAGCTGAAGTCCGAGCTCAGAATCCGCTAAAGTACAGGAACATTTCTGATGTTTTCTGGGAAGCAATTTCTATCCGTCAGGTGCTTTCATTATACCAGTGCCTTGGGACAAAGAACCTGCAGTCCTTTATTTCACAGTTCATCTACTTCGATGGATACAGTTTGTTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

92

Amino Acids

10.41

Weight (kDa)

5.14

Isoelectric Point (pI)

27.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 6 - 89 5.6e-11 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 98, 231
AciI CCGC 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 132
AfaI GTAC 2 cut(s) 77, 140
AgsI TTSAA 1 cut(s) 17
AloI GAACNNNNNNTCC 2 cut(s) 212, 244
AluBI AGCT 3 cut(s) 53, 110, 122
AluI AGCT 3 cut(s) 53, 110, 122
Alw21I GWGCWC 2 cut(s) 55, 124
AoxI GGCC 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 42
AxyI CCTNAGG 1 cut(s) 37
BanII GRGCYC 2 cut(s) 55, 124
Bbv12I GWGCWC 2 cut(s) 55, 124
BccI CCATC 2 cut(s) 77, 251
BciVI GTATCC 1 cut(s) 254
BfmI CTRYAG 1 cut(s) 224
BfuAI ACCTGC 2 cut(s) 98, 231
BfuI GTATCC 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 1 cut(s) 43
BplI GAGNNNNNCTC 2 cut(s) 20, 52
BsaJI CCNNGG 1 cut(s) 208
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bse1I ACTGG 1 cut(s) 202
Bse21I CCTNAGG 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 208
BseMII CTCAG 2 cut(s) 51, 137
BseNI ACTGG 1 cut(s) 202
BshFI GGCC 1 cut(s) 44
BsiHKAI GWGCWC 2 cut(s) 55, 124
BslFI GGGAC 1 cut(s) 226
BsmFI GGGAC 1 cut(s) 226
BsnI GGCC 1 cut(s) 44
Bsp1286I GDGCHC 2 cut(s) 55, 124
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 1 cut(s) 131
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 2 cut(s) 50, 136
BspLI GGNNCC 1 cut(s) 43
BspMAI CTGCAG 1 cut(s) 228
BspMI ACCTGC 2 cut(s) 98, 231
BsrI ACTGG 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 208
BssMI GATC 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 208
Bst4CI ACNGT 2 cut(s) 243, 266
BstDEI CTNAG 2 cut(s) 37, 123
BstKTI GATC 1 cut(s) 13
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstSFI CTRYAG 1 cut(s) 224
BstXI CCANNNNNNTGG 1 cut(s) 209
Bsu36I CCTNAGG 1 cut(s) 37
BsuI GTATCC 1 cut(s) 254
BsuRI GGCC 1 cut(s) 44
BtsIMutI CAGTG 1 cut(s) 209
BveI ACCTGC 2 cut(s) 98, 231
Cfr13I GGNCC 1 cut(s) 42
Csp6I GTAC 2 cut(s) 76, 139
CviJI RGCY 4 cut(s) 44, 53, 110, 122
CviKI_1 RGCY 4 cut(s) 44, 53, 110, 122
CviQI GTAC 2 cut(s) 76, 139
DdeI CTNAG 2 cut(s) 37, 123
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
Ecl136II GAGCTC 2 cut(s) 53, 122
Eco130I CCWWGG 1 cut(s) 208
Eco24I GRGCYC 2 cut(s) 55, 124
Eco53kI GAGCTC 2 cut(s) 53, 122
Eco57I CTGAAG 1 cut(s) 132
Eco81I CCTNAGG 1 cut(s) 37
EcoICRI GAGCTC 2 cut(s) 53, 122
EcoT14I CCWWGG 1 cut(s) 208
EcoT38I GRGCYC 2 cut(s) 55, 124
ErhI CCWWGG 1 cut(s) 208
FaiI YATR 1 cut(s) 199
FaqI GGGAC 1 cut(s) 226
FriOI GRGCYC 2 cut(s) 55, 124
HaeIII GGCC 1 cut(s) 44
HinfI GANTC 2 cut(s) 17, 127
Hpy188I TCNGA 3 cut(s) 119, 126, 154
Hpy188III TCNNGA 1 cut(s) 14
HpyCH4III ACNGT 2 cut(s) 243, 266
HpyCH4V TGCA 3 cut(s) 26, 93, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 2 cut(s) 37, 123
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 8 cut(s) 24, 41, 103, 127, 148, 170, 215, 236
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MhlI GDGCHC 2 cut(s) 55, 124
MluCI AATT 1 cut(s) 171
MnlI CCTC 2 cut(s) 22, 46
MseI TTAA 1 cut(s) 277
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeII GATC 1 cut(s) 10
NlaIV GGNNCC 1 cut(s) 43
PfeI GAWTC 2 cut(s) 17, 127
Psp124BI GAGCTC 2 cut(s) 55, 124
PspN4I GGNNCC 1 cut(s) 43
PspPI GGNCC 1 cut(s) 42
PstI CTGCAG 1 cut(s) 228
RsaI GTAC 2 cut(s) 77, 140
RsaNI GTAC 2 cut(s) 76, 139
SacI GAGCTC 2 cut(s) 55, 124
SaqAI TTAA 1 cut(s) 277
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 1 cut(s) 42
SduI GDGCHC 2 cut(s) 55, 124
SetI ASST 7 cut(s) 38, 55, 92, 112, 124, 189, 225
SfcI CTRYAG 1 cut(s) 224
Sse9I AATT 1 cut(s) 171
SsiI CCGC 1 cut(s) 131
SstI GAGCTC 2 cut(s) 55, 124
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 2 cut(s) 243, 266
TaqI TCGA 1 cut(s) 255
TasI AATT 1 cut(s) 171
TatI WGTACW 1 cut(s) 138
TfiI GAWTC 2 cut(s) 17, 127
Tru1I TTAA 1 cut(s) 277
Tru9I TTAA 1 cut(s) 277
TscAI CASTG 1 cut(s) 209
TspDTI ATGAA 2 cut(s) 183, 235
TspGWI ACGGA 1 cut(s) 170
TspRI CASTG 1 cut(s) 209
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.