RchiOBHm_Chr4g0417801

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Forward (+)
43092738 .. 43097041
4304 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 204 bp
ATGGCAAAAAGTATGAGCAAAAGGATGATGGACTTCCTGTTGAGCTTAAATTACCGGTTAAGCATGTATTGTCTAGAGAGCTTCAGCTATATTTTGACAAAAATCACTGAGCTTGTCGTGAGTAGGTCCGATGTTATTCTTCTTAAAAAAGCACTATTGAGCTTGGCGACTGATTCGGGACTTCATCCATTAGTTCCTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000123 GO:0000124 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010467 GO:0016043 GO:0016049 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0022414 GO:0030154 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044706 GO:0044798 GO:0046483 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051276 GO:0051704 GO:0055029 GO:0060560 GO:0061695 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko03022 ko05168 map03022 map05168
Pfam Domains
Protein Families
TAF TAF6_C

Protein Analysis

67

Amino Acids

7.65

Weight (kDa)

9.25

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 67
AgeI ACCGGT 1 cut(s) 54
AluBI AGCT 5 cut(s) 45, 81, 87, 112, 162
AluI AGCT 5 cut(s) 45, 81, 87, 112, 162
AsiGI ACCGGT 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 126
AvaII GGWCC 1 cut(s) 126
BccI CCATC 1 cut(s) 22
BfaI CTAG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 126
BsaWI WCCGGW 1 cut(s) 54
Bse118I RCCGGY 1 cut(s) 54
BseGI GGATG 2 cut(s) 30, 184
BseMII CTCAG 1 cut(s) 99
BshTI ACCGGT 1 cut(s) 54
BsiSI CCGG 1 cut(s) 55
BslFI GGGAC 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 192
BspCNI CTCAG 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 54
BssAI RCCGGY 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 108
BstF5I GGATG 2 cut(s) 30, 184
BstNSI RCATGY 1 cut(s) 67
BtsCI GGATG 2 cut(s) 30, 184
BtsIMutI CAGTG 1 cut(s) 105
Cfr10I RCCGGY 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 126
CspAI ACCGGT 1 cut(s) 54
CviAII CATG 1 cut(s) 64
CviJI RGCY 5 cut(s) 45, 81, 87, 112, 162
CviKI_1 RGCY 5 cut(s) 45, 81, 87, 112, 162
DdeI CTNAG 1 cut(s) 108
Eco47I GGWCC 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 67
FaeI CATG 1 cut(s) 67
FaiI YATR 3 cut(s) 14, 65, 90
FaqI GGGAC 1 cut(s) 192
FatI CATG 1 cut(s) 63
FokI GGATG 2 cut(s) 37, 171
FspBI CTAG 1 cut(s) 74
HapII CCGG 1 cut(s) 55
Hin1II CATG 1 cut(s) 67
HinfI GANTC 1 cut(s) 173
HpaII CCGG 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 3 cut(s) 74, 118, 177
HpyF3I CTNAG 1 cut(s) 108
Hsp92II CATG 1 cut(s) 67
LpnPI CCDG 2 cut(s) 50, 68
MaeI CTAG 1 cut(s) 74
MboII GAAGA 1 cut(s) 131
MluCI AATT 1 cut(s) 49
MseI TTAA 4 cut(s) 47, 59, 144, 202
MspI CCGG 1 cut(s) 55
NlaIII CATG 1 cut(s) 67
NspI RCATGY 1 cut(s) 67
PfeI GAWTC 1 cut(s) 173
PinAI ACCGGT 1 cut(s) 54
PspPI GGNCC 1 cut(s) 126
SaqAI TTAA 4 cut(s) 47, 59, 144, 202
Sau96I GGNCC 1 cut(s) 126
SetI ASST 6 cut(s) 47, 83, 89, 114, 128, 164
SgeI CNNG 8 cut(s) 49, 67, 76, 86, 125, 130, 175, 189
SinI GGWCC 1 cut(s) 126
Sse9I AATT 1 cut(s) 49
SspMI CTAG 1 cut(s) 74
TasI AATT 1 cut(s) 49
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 4 cut(s) 47, 59, 144, 202
Tru9I TTAA 4 cut(s) 47, 59, 144, 202
TscAI CASTG 1 cut(s) 112
TspDTI ATGAA 1 cut(s) 173
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 126
XbaI TCTAGA 1 cut(s) 73
XceI RCATGY 1 cut(s) 67
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.