RchiOBHm_Chr4g0421071

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Forward (+)
46698699 .. 46700095
1397 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 375 bp
ATGTCATTTTCCGTGCTCCCACCATCTAGAACCTCCGATTATCCCGATGATGTTCGAGTGGCTGCATTGAACTGGAATGGTGAAGGTTCTTTCTTGTTTACATCAAGCTCTGCACCGTATGATTGCAATGACAACAGTCCATATAGAGGTGCCCATGTTTATTGGTTATTGAAGGGGACTGTAGAAGCAAATCCAGATCACGTTCTGAATCCCATACATTATGAGGATGCAGCTTCCCTATCTGTTGCAATCTTAAGGAAGCGATTACGTAACCGGATTCTCTTGGGTTGTGACAATCATCCATTATTCCATTGTCCAGGTTCTAGTCTTTACATTATTCGATGCCCTTCAAAACTGTTGGTCGTTTTGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.82

Weight (kDa)

6.94

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 146
AflII CTTAAG 1 cut(s) 253
AgsI TTSAA 3 cut(s) 70, 172, 351
AjnI CCWGG 1 cut(s) 316
AluBI AGCT 2 cut(s) 108, 233
AluI AGCT 2 cut(s) 108, 233
Alw21I GWGCWC 1 cut(s) 18
ApeKI GCWGC 2 cut(s) 62, 230
AsuHPI GGTGA 1 cut(s) 92
BaeGI GKGCMC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 2 cut(s) 49, 242
BccI CCATC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 318
BfaI CTAG 2 cut(s) 27, 324
BfmI CTRYAG 1 cut(s) 180
BfrI CTTAAG 1 cut(s) 253
BisI GCNGC 2 cut(s) 63, 231
BlsI GCNGC 2 cut(s) 64, 232
Bme1390I CCNGG 1 cut(s) 318
BmiI GGNNCC 1 cut(s) 151
BmrFI CCNGG 1 cut(s) 318
BmsI GCATC 2 cut(s) 217, 332
BoxI GACNNNNGTC 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 269
BsaWI WCCGGW 1 cut(s) 273
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 77
Bse3DI GCAATG 1 cut(s) 133
BseBI CCWGG 1 cut(s) 318
BseGI GGATG 2 cut(s) 232, 298
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMI GCAATG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 77
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 2 cut(s) 49, 242
BsgI GTGCAG 1 cut(s) 96
BshNI GGYRCC 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 1 cut(s) 274
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 190
Bsp1286I GDGCHC 2 cut(s) 18, 154
Bsp143I GATC 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 151
BspT107I GGYRCC 1 cut(s) 149
BspTI CTTAAG 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 133
BsrI ACTGG 1 cut(s) 77
BssMI GATC 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 4 cut(s) 117, 137, 181, 357
BstAFI CTTAAG 1 cut(s) 253
BstBAI YACGTR 1 cut(s) 269
BstF5I GGATG 2 cut(s) 232, 298
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BstNI CCWGG 1 cut(s) 318
BstPAI GACNNNNGTC 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 316
BstSFI CTRYAG 1 cut(s) 180
BstSLI GKGCMC 1 cut(s) 154
BstSNI TACGTA 1 cut(s) 269
BstV1I GCAGC 2 cut(s) 49, 242
BtsCI GGATG 2 cut(s) 232, 298
CviAII CATG 1 cut(s) 155
CviJI RGCY 3 cut(s) 62, 108, 233
CviKI_1 RGCY 3 cut(s) 62, 108, 233
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Eco105I TACGTA 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 316
FaeI CATG 1 cut(s) 158
FaiI YATR 6 cut(s) 120, 142, 144, 156, 215, 222
FaqI GGGAC 1 cut(s) 190
FatI CATG 1 cut(s) 154
Fnu4HI GCNGC 2 cut(s) 63, 231
FokI GGATG 2 cut(s) 239, 285
Fsp4HI GCNGC 2 cut(s) 63, 231
FspBI CTAG 2 cut(s) 27, 324
GluI GCNGC 2 cut(s) 63, 231
HapII CCGG 1 cut(s) 274
Hin1II CATG 1 cut(s) 158
HinfI GANTC 2 cut(s) 208, 277
HpaII CCGG 1 cut(s) 274
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 2 cut(s) 37, 207
Hpy188III TCNNGA 3 cut(s) 27, 44, 194
Hpy8I GTNNAC 1 cut(s) 99
HpyAV CCTTC 3 cut(s) 77, 166, 357
HpyCH4III ACNGT 4 cut(s) 117, 137, 181, 357
HpyCH4IV ACGT 2 cut(s) 201, 268
HpyCH4V TGCA 5 cut(s) 65, 113, 126, 230, 248
HpySE526I ACGT 2 cut(s) 201, 268
Hsp92II CATG 1 cut(s) 158
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 21
LpnPI CCDG 5 cut(s) 58, 207, 287, 303, 330
Lsp1109I GCAGC 2 cut(s) 49, 242
LweI GCATC 2 cut(s) 217, 332
MaeI CTAG 2 cut(s) 27, 324
MaeII ACGT 2 cut(s) 201, 268
MaeIII GTNAC 2 cut(s) 269, 290
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MhlI GDGCHC 2 cut(s) 18, 154
MnlI CCTC 3 cut(s) 43, 140, 217
MseI TTAA 2 cut(s) 254, 373
MspCI CTTAAG 1 cut(s) 253
MspI CCGG 1 cut(s) 274
MspR9I CCNGG 1 cut(s) 318
MvaI CCWGG 1 cut(s) 318
NdeII GATC 1 cut(s) 196
NlaIII CATG 1 cut(s) 158
NlaIV GGNNCC 1 cut(s) 151
NmuCI GTSAC 1 cut(s) 290
PfeI GAWTC 2 cut(s) 208, 277
PkrI GCNGC 2 cut(s) 64, 232
Ppu21I YACGTR 1 cut(s) 269
PshAI GACNNNNGTC 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 1 cut(s) 151
SaqAI TTAA 2 cut(s) 254, 373
SatI GCNGC 2 cut(s) 63, 231
Sau3AI GATC 1 cut(s) 196
ScrFI CCNGG 1 cut(s) 318
SduI GDGCHC 2 cut(s) 18, 154
SetI ASST 8 cut(s) 35, 88, 110, 151, 204, 235, 271, 322
SfaNI GCATC 2 cut(s) 217, 332
SfcI CTRYAG 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
SnaBI TACGTA 1 cut(s) 269
SspMI CTAG 2 cut(s) 27, 324
StyD4I CCNGG 1 cut(s) 316
TaaI ACNGT 4 cut(s) 117, 137, 181, 357
TaiI ACGT 2 cut(s) 204, 271
TaqI TCGA 2 cut(s) 55, 340
TfiI GAWTC 2 cut(s) 208, 277
Tru1I TTAA 2 cut(s) 254, 373
Tru9I TTAA 2 cut(s) 254, 373
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 2 cut(s) 62, 230
Tsp45I GTSAC 1 cut(s) 290
Vha464I CTTAAG 1 cut(s) 253
XbaI TCTAGA 1 cut(s) 26
XspI CTAG 2 cut(s) 27, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.