Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

47813245 .. 47814277

Gene Structure 1033 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGCAGAACAAAGAGGGTCAAATCACTGAGCTCTACATTCCCAGGAAATACTCAGCAACTAACAGTCTCATCACCTCGAAGGATCATGCATCTGTTCGGATCAACATCGGGCATCTTGATGAGAATGGCATCTATACTGGCCAGTTCTCCACTTTTGCTCTTTGTGAATTGTGGTTACGTCCGTGCTCAGACTACTGGATTATCATATTTTCTCTGGTTTTTTGGTATATTGATATTGGATCTTTTAGTCTGTTGAAGGCAATGTACGCTGACAGTGGTCTCGACCGACTCTGGCAGAAGAAGAAAGCAGAAGTGAAACAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000447 GO:0000460 GO:0000461 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030490 GO:0031123 GO:0031125 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S21e

Protein Analysis

108

Amino Acids

12.56

Weight (kDa)

7.75

Isoelectric Point (pI)

26.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S21e	PF01249	1 - 56	6.7e-24	Ribosomal protein S21e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	90, 107, 247
AcoI	YGGCCR	1 cut(s)	139
AfaI	GTAC	1 cut(s)	266
AgsI	TTSAA	1 cut(s)	256
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
Alw21I	GWGCWC	2 cut(s)	33, 188
Alw26I	GTCTC	2 cut(s)	71, 284
AlwI	GGATC	3 cut(s)	90, 107, 247
AoxI	GGCC	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	64
BalI	TGGCCA	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	33
BarI	GAAGNNNNNNTAC	2 cut(s)	248, 280
Bbv12I	GWGCWC	2 cut(s)	33, 188
BciT130I	CCWGG	1 cut(s)	43
BcoDI	GTCTC	2 cut(s)	71, 284
Bme1390I	CCNGG	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	3 cut(s)	98, 121, 138
BoxI	GACNNNNGTC	1 cut(s)	276
BsaBI	GATNNNNATC	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	41
Bse1I	ACTGG	3 cut(s)	142, 142, 200
Bse3DI	GCAATG	1 cut(s)	267
Bse8I	GATNNNNATC	1 cut(s)	104
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	41
BseJI	GATNNNNATC	1 cut(s)	104
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	3 cut(s)	18, 66, 201
BseNI	ACTGG	3 cut(s)	142, 142, 200
Bsh1285I	CGRYCG	1 cut(s)	286
BshFI	GGCC	1 cut(s)	141
BsiEI	CGRYCG	1 cut(s)	286
BsiHKAI	GWGCWC	2 cut(s)	33, 188
BsmAI	GTCTC	2 cut(s)	71, 284
BsnI	GGCC	1 cut(s)	141
Bso31I	GGTCTC	1 cut(s)	284
Bsp1286I	GDGCHC	2 cut(s)	33, 188
Bsp143I	GATC	3 cut(s)	82, 99, 239
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	3 cut(s)	19, 65, 200
BspPI	GGATC	3 cut(s)	90, 107, 247
BspTNI	GGTCTC	1 cut(s)	284
BsrDI	GCAATG	1 cut(s)	267
BsrI	ACTGG	3 cut(s)	142, 142, 200
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	3 cut(s)	82, 99, 239
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	3 cut(s)	65, 275, 324
BstDEI	CTNAG	3 cut(s)	27, 52, 187
BstKTI	GATC	3 cut(s)	85, 102, 242
BstMAI	GTCTC	2 cut(s)	71, 284
BstMBI	GATC	3 cut(s)	82, 99, 239
BstMCI	CGRYCG	1 cut(s)	286
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNI	CCWGG	1 cut(s)	43
BstPAI	GACNNNNGTC	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	239
BsuRI	GGCC	1 cut(s)	141
BtsIMutI	CAGTG	2 cut(s)	24, 280
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	2 cut(s)	31, 141
CviKI_1	RGCY	2 cut(s)	31, 141
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	3 cut(s)	27, 52, 187
DpnI	GATC	3 cut(s)	84, 101, 241
DpnII	GATC	3 cut(s)	82, 99, 239
EaeI	YGGCCR	1 cut(s)	139
Ecl136II	GAGCTC	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	284
Eco53kI	GAGCTC	1 cut(s)	31
EcoICRI	GAGCTC	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	41
EcoT22I	ATGCAT	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	33
FaeI	CATG	1 cut(s)	89
FaiI	YATR	4 cut(s)	87, 135, 206, 228
FatI	CATG	1 cut(s)	85
FriOI	GRGCYC	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	89
HinfI	GANTC	1 cut(s)	288
HphI	GGTGA	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	99, 190
Hpy188III	TCNNGA	2 cut(s)	116, 281
HpyAV	CCTTC	2 cut(s)	73, 250
HpyCH4III	ACNGT	3 cut(s)	65, 275, 324
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	2 cut(s)	4, 89
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	3 cut(s)	27, 52, 187
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	1 cut(s)	89
Kzo9I	GATC	3 cut(s)	82, 99, 239
LpnPI	CCDG	7 cut(s)	28, 55, 123, 155, 181, 200, 277
LweI	GCATC	3 cut(s)	98, 121, 138
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	1 cut(s)	174
MalI	GATC	3 cut(s)	84, 101, 241
MboI	GATC	3 cut(s)	82, 99, 239
MboII	GAAGA	2 cut(s)	310, 313
MflI	RGATCY	1 cut(s)	239
MhlI	GDGCHC	2 cut(s)	33, 188
MlsI	TGGCCA	1 cut(s)	141
MluCI	AATT	1 cut(s)	167
MluNI	TGGCCA	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	282
MnlI	CCTC	2 cut(s)	7, 85
Mox20I	TGGCCA	1 cut(s)	141
Mph1103I	ATGCAT	1 cut(s)	91
MscI	TGGCCA	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	117
Msp20I	TGGCCA	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	43
MvaI	CCWGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	1 cut(s)	266
NdeII	GATC	3 cut(s)	82, 99, 239
NlaIII	CATG	1 cut(s)	89
NsiI	ATGCAT	1 cut(s)	91
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
PshAI	GACNNNNGTC	1 cut(s)	276
Psp124BI	GAGCTC	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	239
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	117
SacI	GAGCTC	1 cut(s)	33
Sau3AI	GATC	3 cut(s)	82, 99, 239
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	1 cut(s)	43
SduI	GDGCHC	2 cut(s)	33, 188
SetI	ASST	3 cut(s)	33, 77, 181
SfaNI	GCATC	3 cut(s)	98, 121, 138
SmiMI	CAYNNNNRTG	1 cut(s)	117
Sse9I	AATT	1 cut(s)	167
SstI	GAGCTC	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	41
TaaI	ACNGT	3 cut(s)	65, 275, 324
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	2 cut(s)	77, 282
TaqII	GACCGA	1 cut(s)	300
TasI	AATT	1 cut(s)	167
TscAI	CASTG	2 cut(s)	31, 280
TspGWI	ACGGA	1 cut(s)	171
TspRI	CASTG	2 cut(s)	31, 280
Zsp2I	ATGCAT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.