RchiOBHm_Chr4g0423431

Encoded by

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Forward (+)
49049832 .. 49050998
1167 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 261 bp
ATGGCTCCTTTTTTGTGCAGGAATCGATCTTTTTTTAGACTCAAGGTTGTTCATGAAATCTTTTTTCATCTTATTTATGGTTTGAAGGAGTTTACCATTGTCAAATTGGGTTTGTCATCAACAAGGAGAAGGAAGGCAATTTTTGGAATTGCGTTGAGGAAAGCAGGAGAGTTGCAGGATGGTGTCACTCTATCTGATGCTGATGATCTGTCTTTAACTTTTGAAAAGGTGAACAAGGATGTAAATGGAACTAGGAGCTAG

Protein Analysis

86

Amino Acids

9.8

Weight (kDa)

10.0

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 85, 224
AluBI AGCT 1 cut(s) 258
AluI AGCT 1 cut(s) 258
AsuHPI GGTGA 1 cut(s) 241
BccI CCATC 1 cut(s) 173
BfaI CTAG 2 cut(s) 252, 259
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 187
BpuEI CTTGAG 1 cut(s) 26
Bsa29I ATCGAT 1 cut(s) 25
BseCI ATCGAT 1 cut(s) 25
BseGI GGATG 2 cut(s) 184, 244
BsgI GTGCAG 1 cut(s) 37
BshVI ATCGAT 1 cut(s) 25
Bsp143I GATC 2 cut(s) 26, 205
BspDI ATCGAT 1 cut(s) 25
BspHI TCATGA 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 6
BssMI GATC 2 cut(s) 26, 205
BstF5I GGATG 2 cut(s) 184, 244
BstKTI GATC 2 cut(s) 29, 208
BstMBI GATC 2 cut(s) 26, 205
Bsu15I ATCGAT 1 cut(s) 25
BsuTUI ATCGAT 1 cut(s) 25
BtsCI GGATG 2 cut(s) 184, 244
CciI TCATGA 1 cut(s) 52
ClaI ATCGAT 1 cut(s) 25
CviAII CATG 1 cut(s) 53
CviJI RGCY 2 cut(s) 5, 258
CviKI_1 RGCY 2 cut(s) 5, 258
DpnI GATC 2 cut(s) 28, 207
DpnII GATC 2 cut(s) 26, 205
FaeI CATG 1 cut(s) 56
FaiI YATR 2 cut(s) 54, 78
FatI CATG 1 cut(s) 52
FokI GGATG 2 cut(s) 191, 251
FspBI CTAG 2 cut(s) 252, 259
Hin1II CATG 1 cut(s) 56
HinfI GANTC 2 cut(s) 22, 39
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 2 cut(s) 93, 232
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 2 cut(s) 93, 232
HpyAV CCTTC 3 cut(s) 79, 123, 127
HpyCH4V TGCA 2 cut(s) 18, 175
Hsp92II CATG 1 cut(s) 56
Kzo9I GATC 2 cut(s) 26, 205
LmnI GCTCC 2 cut(s) 10, 255
LpnPI CCDG 3 cut(s) 4, 150, 161
LweI GCATC 1 cut(s) 187
MaeI CTAG 2 cut(s) 252, 259
MaeIII GTNAC 1 cut(s) 184
MalI GATC 2 cut(s) 28, 207
MboI GATC 2 cut(s) 26, 205
MluCI AATT 3 cut(s) 104, 138, 147
MlyI GAGTC 1 cut(s) 33
MnlI CCTC 1 cut(s) 150
MseI TTAA 1 cut(s) 215
NdeII GATC 2 cut(s) 26, 205
NlaIII CATG 1 cut(s) 56
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 184
PagI TCATGA 1 cut(s) 52
PfeI GAWTC 1 cut(s) 22
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 6
SaqAI TTAA 1 cut(s) 215
Sau3AI GATC 2 cut(s) 26, 205
SchI GAGTC 1 cut(s) 33
SetI ASST 3 cut(s) 48, 231, 260
SfaNI GCATC 1 cut(s) 187
SgeI CNNG 7 cut(s) 31, 55, 65, 135, 177, 188, 247
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 3 cut(s) 104, 138, 147
SspMI CTAG 2 cut(s) 252, 259
TaqI TCGA 1 cut(s) 25
TasI AATT 3 cut(s) 104, 138, 147
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TseFI GTSAC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 3 cut(s) 41, 56, 69
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XspI CTAG 2 cut(s) 252, 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.