RchiOBHm_Chr4g0423951

protection from non-homologous end joining at telomere

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Forward (+)
49511767 .. 49512518
752 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 228 bp
ATGGCGTTGAGTGGGATGAAGAAGGTGAAGGCAGGAGCTCCTGGTTTTCACTGGATCAAGGAGAAGTACCACAAGACTACCGGAAAGCAGATCATCTTTGATTATTGCCTTCGACGACGGCATGATGTACTACCAATCATCACGAAGGGCTTCGACGACGGAGCGTACGGCCACTGCCTTGTCGCCGGATTCGGACAAGAAGTTAAGGATCAAGCTATATCGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.43

Weight (kDa)

9.43

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 62, 216
AcoI YGGCCR 1 cut(s) 169
AfaI GTAC 3 cut(s) 68, 129, 167
AjnI CCWGG 1 cut(s) 40
AluBI AGCT 2 cut(s) 38, 215
AluI AGCT 2 cut(s) 38, 215
Alw21I GWGCWC 1 cut(s) 40
AlwI GGATC 2 cut(s) 62, 216
AoxI GGCC 1 cut(s) 169
Asp700I GAANNNNTTC 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 37
BanII GRGCYC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 40
BceAI ACGGC 2 cut(s) 134, 184
BciT130I CCWGG 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 42
BsaWI WCCGGW 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 56
BseBI CCWGG 1 cut(s) 42
BseGI GGATG 1 cut(s) 21
BseNI ACTGG 1 cut(s) 56
BshFI GGCC 1 cut(s) 171
BsiHKAI GWGCWC 1 cut(s) 40
BsiSI CCGG 2 cut(s) 81, 186
BsiWI CGTACG 1 cut(s) 165
BsnI GGCC 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 3 cut(s) 54, 90, 208
BspANI GGCC 1 cut(s) 171
BspPI GGATC 2 cut(s) 62, 216
BsrI ACTGG 1 cut(s) 56
BssMI GATC 3 cut(s) 54, 90, 208
Bst2UI CCWGG 1 cut(s) 42
BstF5I GGATG 1 cut(s) 21
BstKTI GATC 3 cut(s) 57, 93, 211
BstMBI GATC 3 cut(s) 54, 90, 208
BstNI CCWGG 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 40
BsuRI GGCC 1 cut(s) 171
BtsCI GGATG 1 cut(s) 21
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 2 cut(s) 49, 172
Csp6I GTAC 3 cut(s) 67, 128, 166
CviAII CATG 1 cut(s) 122
CviJI RGCY 4 cut(s) 38, 150, 171, 215
CviKI_1 RGCY 4 cut(s) 38, 150, 171, 215
CviQI GTAC 3 cut(s) 67, 128, 166
DpnI GATC 3 cut(s) 56, 92, 210
DpnII GATC 3 cut(s) 54, 90, 208
EaeI YGGCCR 1 cut(s) 169
Ecl136II GAGCTC 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 40
Eco53kI GAGCTC 1 cut(s) 38
EcoICRI GAGCTC 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 40
EcoT38I GRGCYC 1 cut(s) 40
FaeI CATG 1 cut(s) 125
FaiI YATR 2 cut(s) 123, 218
FatI CATG 1 cut(s) 121
FokI GGATG 1 cut(s) 28
FriOI GRGCYC 1 cut(s) 40
HaeIII GGCC 1 cut(s) 171
HapII CCGG 2 cut(s) 81, 186
Hin1II CATG 1 cut(s) 125
HinfI GANTC 1 cut(s) 189
HpaII CCGG 2 cut(s) 81, 186
HphI GGTGA 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 194
Hpy188III TCNNGA 1 cut(s) 142
Hpy99I CGWCG 4 cut(s) 117, 120, 158, 161
HpyAV CCTTC 4 cut(s) 16, 22, 119, 139
Hsp92II CATG 1 cut(s) 125
Kzo9I GATC 3 cut(s) 54, 90, 208
LmnI GCTCC 3 cut(s) 35, 43, 161
LpnPI CCDG 6 cut(s) 18, 27, 37, 54, 94, 199
MalI GATC 3 cut(s) 56, 92, 210
MboI GATC 3 cut(s) 54, 90, 208
MboII GAAGA 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 40
MroXI GAANNNNTTC 1 cut(s) 149
MseI TTAA 1 cut(s) 204
MspI CCGG 2 cut(s) 81, 186
MspR9I CCNGG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 42
NdeII GATC 3 cut(s) 54, 90, 208
NlaIII CATG 1 cut(s) 125
PdmI GAANNNNTTC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 189
Pfl23II CGTACG 1 cut(s) 165
Psp124BI GAGCTC 1 cut(s) 40
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspLI CGTACG 1 cut(s) 165
RsaI GTAC 3 cut(s) 68, 129, 167
RsaNI GTAC 3 cut(s) 67, 128, 166
SacI GAGCTC 1 cut(s) 40
SaqAI TTAA 1 cut(s) 204
Sau3AI GATC 3 cut(s) 54, 90, 208
ScrFI CCNGG 1 cut(s) 42
SduI GDGCHC 1 cut(s) 40
SetI ASST 3 cut(s) 27, 40, 217
SstI GAGCTC 1 cut(s) 40
StyD4I CCNGG 1 cut(s) 40
TaqI TCGA 2 cut(s) 112, 153
TatI WGTACW 1 cut(s) 127
TfiI GAWTC 1 cut(s) 189
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 2 cut(s) 56, 179
TspDTI ATGAA 1 cut(s) 32
TspGWI ACGGA 1 cut(s) 174
TspRI CASTG 2 cut(s) 56, 179
XmnI GAANNNNTTC 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.