RchiOBHm_Chr4g0425081

Cell division control protein 24, OB domain 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Forward (+)
50765915 .. 50766677
763 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 471 bp
ATGTTTAGGTTCCAGCTAAATAGATGCCACGACAGCATAGAAGCAATATGGTCCGAGAATACTGGTGGAGCTTCTTTCTTCAACCTCATTAGCTTGCCAGCACTGCTAAATTCATCTTGTCTTCATAAACTAACAAAGCTCTCTGATCTTTCCAGCCAGACTAGCTGTACTCAGATAGTTCACATTCGGCTTGAAATGGTTCAATTTCATCTCAGTACAAGGTTGTCACATGCCGTATGTGGTCATTTTGTTACCGAGCAACCCATGGGAGTTTCTAAATGCAGCTTTTGTAATGAGAATTGTGATGAAGTAATTCGCACTTTCCACCTGAAAATGACTCTTGCTGACAAGAGTGGGGGAAAGTTTTTGCATGGTGTACTGGTCATACTGCTACAGAGATCCTGCAAATATCTCCTGATGAATTCTTTGAACTACCTGAGGAAGAACAAGTTATGTATCCCGCTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC24_OB1 CDC24_OB2 CDC24_OB3

Protein Analysis

156

Amino Acids

17.7

Weight (kDa)

8.93

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC24_OB3 PF17244 10 - 121 8e-29 Cell division control protein 24, OB domain 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 461
AclWI GGATC 1 cut(s) 393
AcsI RAATTY 2 cut(s) 109, 421
AfaI GTAC 3 cut(s) 169, 217, 378
AgsI TTSAA 4 cut(s) 82, 194, 203, 430
AluBI AGCT 6 cut(s) 16, 71, 93, 139, 165, 285
AluI AGCT 6 cut(s) 16, 71, 93, 139, 165, 285
AlwI GGATC 1 cut(s) 393
ApeKI GCWGC 1 cut(s) 282
ApoI RAATTY 2 cut(s) 109, 421
Asp700I GAANNNNTTC 2 cut(s) 198, 312
AspS9I GGNCC 1 cut(s) 51
AvaII GGWCC 1 cut(s) 51
AxyI CCTNAGG 1 cut(s) 437
BbsI GAAGAC 1 cut(s) 113
BbvI GCAGC 1 cut(s) 294
BceAI ACGGC 1 cut(s) 218
BciVI GTATCC 1 cut(s) 467
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 392
BfuI GTATCC 1 cut(s) 467
BisI GCNGC 1 cut(s) 283
BlsI GCNGC 1 cut(s) 284
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 11
BmsI GCATC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 264
Bse1I ACTGG 2 cut(s) 67, 384
Bse21I CCTNAGG 1 cut(s) 437
BseDI CCNNGG 1 cut(s) 264
BseMII CTCAG 3 cut(s) 185, 226, 428
BseNI ACTGG 2 cut(s) 67, 384
BseXI GCAGC 1 cut(s) 294
Bsp143I GATC 2 cut(s) 145, 398
Bsp19I CCATGG 1 cut(s) 264
BspACI CCGC 1 cut(s) 461
BspCNI CTCAG 3 cut(s) 184, 225, 429
BspLI GGNNCC 1 cut(s) 11
BspPI GGATC 1 cut(s) 393
BsrI ACTGG 2 cut(s) 67, 384
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 2 cut(s) 145, 398
BssT1I CCWWGG 1 cut(s) 264
BstC8I GCNNGC 2 cut(s) 95, 99
BstDEI CTNAG 3 cut(s) 171, 212, 437
BstDSI CCRYGG 1 cut(s) 264
BstKTI GATC 2 cut(s) 148, 401
BstMBI GATC 2 cut(s) 145, 398
BstMWI GCNNNNNNNGC 3 cut(s) 33, 103, 162
BstNSI RCATGY 1 cut(s) 233
BstSFI CTRYAG 1 cut(s) 392
BstV1I GCAGC 1 cut(s) 294
BstV2I GAAGAC 1 cut(s) 113
BstX2I RGATCY 1 cut(s) 398
BstYI RGATCY 1 cut(s) 398
Bsu36I CCTNAGG 1 cut(s) 437
BsuI GTATCC 1 cut(s) 467
BtgI CCRYGG 1 cut(s) 264
BtsI GCAGTG 1 cut(s) 101
BtsIMutI CAGTG 1 cut(s) 101
Cac8I GCNNGC 2 cut(s) 95, 99
Cfr13I GGNCC 1 cut(s) 51
Csp6I GTAC 3 cut(s) 168, 216, 377
CviAII CATG 3 cut(s) 230, 265, 371
CviJI RGCY 8 cut(s) 16, 71, 93, 139, 156, 165, 190, 285
CviKI_1 RGCY 8 cut(s) 16, 71, 93, 139, 156, 165, 190, 285
CviQI GTAC 3 cut(s) 168, 216, 377
DdeI CTNAG 3 cut(s) 171, 212, 437
DpnI GATC 2 cut(s) 147, 400
DpnII GATC 2 cut(s) 145, 398
Eco130I CCWWGG 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 51
Eco81I CCTNAGG 1 cut(s) 437
EcoRI GAATTC 1 cut(s) 421
EcoT14I CCWWGG 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 3 cut(s) 233, 268, 374
FaiI YATR 9 cut(s) 38, 49, 126, 231, 238, 266, 372, 386, 454
FatI CATG 3 cut(s) 229, 264, 370
FauI CCCGC 1 cut(s) 468
Fnu4HI GCNGC 1 cut(s) 283
Fsp4HI GCNGC 1 cut(s) 283
FspBI CTAG 1 cut(s) 162
GluI GCNGC 1 cut(s) 283
Hin1II CATG 3 cut(s) 233, 268, 374
HinfI GANTC 1 cut(s) 337
Hpy166II GTNNAC 2 cut(s) 181, 377
Hpy188I TCNGA 3 cut(s) 55, 145, 174
Hpy188III TCNNGA 1 cut(s) 415
Hpy8I GTNNAC 2 cut(s) 181, 377
HpyCH4V TGCA 3 cut(s) 282, 370, 405
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 103, 162
HpyF3I CTNAG 3 cut(s) 171, 212, 437
Hsp92II CATG 3 cut(s) 233, 268, 374
Kzo9I GATC 2 cut(s) 145, 398
LmnI GCTCC 1 cut(s) 68
Lsp1109I GCAGC 1 cut(s) 294
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 225, 250
MalI GATC 2 cut(s) 147, 400
MboI GATC 2 cut(s) 145, 398
MboII GAAGA 3 cut(s) 70, 113, 454
MflI RGATCY 1 cut(s) 398
MluCI AATT 5 cut(s) 109, 203, 298, 312, 421
MlyI GAGTC 1 cut(s) 331
MnlI CCTC 2 cut(s) 95, 432
MroXI GAANNNNTTC 2 cut(s) 198, 312
MwoI GCNNNNNNNGC 3 cut(s) 33, 103, 162
NcoI CCATGG 1 cut(s) 264
NdeII GATC 2 cut(s) 145, 398
NlaIII CATG 3 cut(s) 233, 268, 374
NlaIV GGNNCC 1 cut(s) 11
NmuCI GTSAC 1 cut(s) 225
NspI RCATGY 1 cut(s) 233
PdmI GAANNNNTTC 2 cut(s) 198, 312
PkrI GCNGC 1 cut(s) 284
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 11
PspPI GGNCC 1 cut(s) 51
PsuI RGATCY 1 cut(s) 398
RsaI GTAC 3 cut(s) 169, 217, 378
RsaNI GTAC 3 cut(s) 168, 216, 377
SatI GCNGC 1 cut(s) 283
Sau3AI GATC 2 cut(s) 145, 398
Sau96I GGNCC 1 cut(s) 51
SchI GAGTC 1 cut(s) 331
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 392
SinI GGWCC 1 cut(s) 51
Sse9I AATT 5 cut(s) 109, 203, 298, 312, 421
SsiI CCGC 1 cut(s) 461
SspMI CTAG 1 cut(s) 162
StyI CCWWGG 1 cut(s) 264
TasI AATT 5 cut(s) 109, 203, 298, 312, 421
TatI WGTACW 3 cut(s) 167, 215, 376
TscAI CASTG 1 cut(s) 108
TseFI GTSAC 1 cut(s) 225
TseI GCWGC 1 cut(s) 282
Tsp45I GTSAC 1 cut(s) 225
TspDTI ATGAA 6 cut(s) 102, 113, 197, 321, 434, 455
TspRI CASTG 1 cut(s) 108
VpaK11BI GGWCC 1 cut(s) 51
XapI RAATTY 2 cut(s) 109, 421
XceI RCATGY 1 cut(s) 233
XmnI GAANNNNTTC 2 cut(s) 198, 312
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.