RchiOBHm_Chr4g0426081

Cleavage inducing molecular chaperone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Reverse (-)
51600180 .. 51601530
1351 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 432 bp
ATGGCTCGGAAGGCTAATCAACAGAAGAATGGGGTTGATCGGCAGACGTCGAAGCAAAAGAAGAAGGGTTCGGAGTCAGGGGGTACACCCGCAGAAACAAAAGCGAATGGGAAAGCAAGTGAGGTGAAAGTTTTCCCTGGAGAAGAAATCTCAAATGGTGACCAGCCAAGCAGTCCTCTTTCAGCAGGTGTGAGTAAAACCAATCATGCTGGAGATGAGAATAAAAGCAAGCAAAAACCTGGGAAGGTTTTGAGGAAAGAGAATCAAGGGACGGATCCAATGCCGGGTCAAGGGCAGTCGACGTCTTCAGGAAGTGATTCAGGAAATTGCAATGGAAATAATGAAGCTCCAAGCATAAGAGAGCATAATGGGCCGTTACCCCATAGTGAAATACGTCGCAAACATGCAAAAGAAAATCAGGTTACTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ Jiv90

Protein Analysis

143

Amino Acids

15.14

Weight (kDa)

9.64

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 176
AatII GACGTC 2 cut(s) 50, 305
Acc36I ACCTGC 1 cut(s) 176
AccI GTMKAC 1 cut(s) 299
AciI CCGC 1 cut(s) 90
AclWI GGATC 2 cut(s) 269, 282
AcuI CTGAAG 1 cut(s) 291
AcyI GRCGYC 2 cut(s) 47, 302
AfaI GTAC 1 cut(s) 85
AfiI CCNNNNNNNGG 2 cut(s) 284, 290
AjnI CCWGG 2 cut(s) 136, 238
AluBI AGCT 1 cut(s) 347
AluI AGCT 1 cut(s) 347
AlwI GGATC 2 cut(s) 269, 282
AoxI GGCC 1 cut(s) 371
Asp700I GAANNNNTTC 2 cut(s) 131, 316
AspS9I GGNCC 1 cut(s) 371
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 2 cut(s) 136, 170
BamHI GGATCC 1 cut(s) 274
BbsI GAAGAC 1 cut(s) 297
BceAI ACGGC 1 cut(s) 358
BciT130I CCWGG 2 cut(s) 138, 240
BcnI CCSGG 1 cut(s) 285
BfuAI ACCTGC 1 cut(s) 176
Bme1390I CCNGG 3 cut(s) 138, 240, 285
BmgT120I GGNCC 1 cut(s) 371
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 3 cut(s) 138, 240, 285
BpiI GAAGAC 1 cut(s) 297
BpmI CTGGAG 2 cut(s) 159, 231
BpuMI CCSGG 1 cut(s) 285
BsaHI GRCGYC 2 cut(s) 47, 302
BsaJI CCNNGG 2 cut(s) 136, 239
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 290
Bse3DI GCAATG 1 cut(s) 337
BseBI CCWGG 2 cut(s) 138, 240
BseDI CCNNGG 2 cut(s) 136, 239
BseLI CCNNNNNNNGG 2 cut(s) 284, 290
BseMI GCAATG 1 cut(s) 337
BshFI GGCC 1 cut(s) 373
BsiSI CCGG 1 cut(s) 284
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 2 cut(s) 284, 290
BsmFI GGGAC 1 cut(s) 283
BsnI GGCC 1 cut(s) 373
Bsp143I GATC 2 cut(s) 37, 274
BspACI CCGC 1 cut(s) 90
BspANI GGCC 1 cut(s) 373
BspLI GGNNCC 1 cut(s) 276
BspMI ACCTGC 1 cut(s) 176
BspPI GGATC 2 cut(s) 269, 282
BsrDI GCAATG 1 cut(s) 337
BssECI CCNNGG 2 cut(s) 136, 239
BssMI GATC 2 cut(s) 37, 274
BssNI GRCGYC 2 cut(s) 47, 302
Bst2UI CCWGG 2 cut(s) 138, 240
BstACI GRCGYC 2 cut(s) 47, 302
BstC8I GCNNGC 1 cut(s) 230
BstEII GGTNACC 1 cut(s) 158
BstKTI GATC 2 cut(s) 40, 277
BstMBI GATC 2 cut(s) 37, 274
BstMWI GCNNNNNNNGC 2 cut(s) 11, 370
BstNI CCWGG 2 cut(s) 138, 240
BstNSI RCATGY 1 cut(s) 407
BstPI GGTNACC 1 cut(s) 158
BstSCI CCNGG 3 cut(s) 136, 238, 283
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BsuRI GGCC 1 cut(s) 373
BtsIMutI CAGTG 1 cut(s) 427
BveI ACCTGC 1 cut(s) 176
Cac8I GCNNGC 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 371
Csp6I GTAC 1 cut(s) 84
CviAII CATG 2 cut(s) 206, 404
CviJI RGCY 5 cut(s) 5, 14, 166, 347, 373
CviKI_1 RGCY 5 cut(s) 5, 14, 166, 347, 373
CviQI GTAC 1 cut(s) 84
DpnI GATC 2 cut(s) 39, 276
DpnII GATC 2 cut(s) 37, 274
Eco57I CTGAAG 1 cut(s) 291
Eco91I GGTNACC 1 cut(s) 158
EcoO65I GGTNACC 1 cut(s) 158
EcoRII CCWGG 2 cut(s) 136, 238
FaeI CATG 2 cut(s) 209, 407
FaiI YATR 5 cut(s) 207, 356, 366, 384, 405
FaqI GGGAC 1 cut(s) 283
FatI CATG 2 cut(s) 205, 403
FauI CCCGC 1 cut(s) 97
FblI GTMKAC 1 cut(s) 299
GsuI CTGGAG 2 cut(s) 159, 231
HaeIII GGCC 1 cut(s) 373
HapII CCGG 1 cut(s) 284
Hin1I GRCGYC 2 cut(s) 47, 302
Hin1II CATG 2 cut(s) 209, 407
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HinfI GANTC 3 cut(s) 74, 262, 317
HpaII CCGG 1 cut(s) 284
HphI GGTGA 2 cut(s) 136, 170
Hpy166II GTNNAC 2 cut(s) 86, 300
Hpy188I TCNGA 2 cut(s) 9, 73
Hpy188III TCNNGA 2 cut(s) 309, 321
Hpy8I GTNNAC 2 cut(s) 86, 300
Hpy99I CGWCG 3 cut(s) 52, 304, 399
HpyAV CCTTC 3 cut(s) 4, 58, 238
HpyCH4IV ACGT 3 cut(s) 47, 302, 394
HpyCH4V TGCA 2 cut(s) 330, 407
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 370
HpySE526I ACGT 3 cut(s) 47, 302, 394
Hsp92I GRCGYC 2 cut(s) 47, 302
Hsp92II CATG 2 cut(s) 209, 407
Kzo9I GATC 2 cut(s) 37, 274
LmnI GCTCC 1 cut(s) 352
MaeII ACGT 3 cut(s) 47, 302, 394
MaeIII GTNAC 3 cut(s) 158, 375, 421
MalI GATC 2 cut(s) 39, 276
MboI GATC 2 cut(s) 37, 274
MboII GAAGA 4 cut(s) 37, 73, 155, 297
MflI RGATCY 1 cut(s) 274
MluCI AATT 1 cut(s) 325
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 3 cut(s) 115, 186, 246
MroXI GAANNNNTTC 2 cut(s) 131, 316
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 3 cut(s) 138, 240, 285
MvaI CCWGG 2 cut(s) 138, 240
MwoI GCNNNNNNNGC 2 cut(s) 11, 370
NciI CCSGG 1 cut(s) 285
NdeII GATC 2 cut(s) 37, 274
NlaIII CATG 2 cut(s) 209, 407
NlaIV GGNNCC 1 cut(s) 276
NmuCI GTSAC 1 cut(s) 158
NspI RCATGY 1 cut(s) 407
PaqCI CACCTGC 1 cut(s) 176
PdmI GAANNNNTTC 2 cut(s) 131, 316
PfeI GAWTC 2 cut(s) 262, 317
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
Psp6I CCWGG 2 cut(s) 136, 238
PspEI GGTNACC 1 cut(s) 158
PspGI CCWGG 2 cut(s) 136, 238
PspN4I GGNNCC 1 cut(s) 276
PspPI GGNCC 1 cut(s) 371
PsuI RGATCY 1 cut(s) 274
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
SalI GTCGAC 1 cut(s) 298
Sau3AI GATC 2 cut(s) 37, 274
Sau96I GGNCC 1 cut(s) 371
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 3 cut(s) 138, 240, 285
SetI ASST 9 cut(s) 50, 126, 190, 241, 249, 305, 349, 397, 423
Sse9I AATT 1 cut(s) 325
SsiI CCGC 1 cut(s) 90
StyD4I CCNGG 3 cut(s) 136, 238, 283
TaiI ACGT 3 cut(s) 50, 305, 397
TaqI TCGA 2 cut(s) 50, 299
TasI AATT 1 cut(s) 325
TfiI GAWTC 2 cut(s) 262, 317
TseFI GTSAC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 357
TspGWI ACGGA 1 cut(s) 287
XceI RCATGY 1 cut(s) 407
XmiI GTMKAC 1 cut(s) 299
XmnI GAANNNNTTC 2 cut(s) 131, 316
ZraI GACGTC 2 cut(s) 48, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.