RchiOBHm_Chr4g0427491

sugar phosphate phosphate translocator

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Reverse (-)
52753390 .. 52753623
234 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 234 bp
ATGTCTGTGCCTTGGTTATTACTTGAGAAGCCTGCAATGGAAGTTTCACAAATTCAGTTCAACTTCCGGATCTTTTTCTTCAATGCTCTATGTGATTTAGCTTTGAACTTCTCCATGTTCTTAGTAATTGGTAGAACTGGAGCAGTTACCATTCGAGTTGCTGGTGTTTTAAAAGACTGGATTTTAATTGCCCTTTCAACTGTTATATTTCCGGAGTCTATCATAATCACTTAA

Protein Analysis

77

Amino Acids

8.69

Weight (kDa)

6.04

Isoelectric Point (pI)

26.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 66, 211
AclWI GGATC 1 cut(s) 77
AcsI RAATTY 1 cut(s) 51
AgsI TTSAA 4 cut(s) 61, 82, 106, 198
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
AlwI GGATC 1 cut(s) 77
Aor13HI TCCGGA 2 cut(s) 66, 211
ApoI RAATTY 1 cut(s) 51
BpmI CTGGAG 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 11
BsaWI WCCGGW 2 cut(s) 66, 211
Bse1I ACTGG 2 cut(s) 142, 182
Bse3DI GCAATG 1 cut(s) 42
BseAI TCCGGA 2 cut(s) 66, 211
BseDI CCNNGG 1 cut(s) 11
BseMI GCAATG 1 cut(s) 42
BseNI ACTGG 2 cut(s) 142, 182
BsiSI CCGG 2 cut(s) 67, 212
Bsp13I TCCGGA 2 cut(s) 66, 211
Bsp143I GATC 1 cut(s) 69
BspEI TCCGGA 2 cut(s) 66, 211
BspPI GGATC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 42
BsrI ACTGG 2 cut(s) 142, 182
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 11
Bst4CI ACNGT 1 cut(s) 202
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 121
BstKTI GATC 1 cut(s) 72
BstMBI GATC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 33
CviAII CATG 1 cut(s) 115
CviJI RGCY 2 cut(s) 31, 101
CviKI_1 RGCY 2 cut(s) 31, 101
DdeI CTNAG 1 cut(s) 121
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
DraI TTTAAA 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 11
EcoT14I CCWWGG 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 11
FaeI CATG 1 cut(s) 118
FaiI YATR 4 cut(s) 91, 116, 206, 224
FatI CATG 1 cut(s) 114
GsuI CTGGAG 1 cut(s) 159
HapII CCGG 2 cut(s) 67, 212
Hin1II CATG 1 cut(s) 118
HinfI GANTC 1 cut(s) 215
HpaII CCGG 2 cut(s) 67, 212
Hpy188III TCNNGA 2 cut(s) 67, 212
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 121
Hsp92II CATG 1 cut(s) 118
Kpn2I TCCGGA 2 cut(s) 66, 211
Kzo9I GATC 1 cut(s) 69
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 6 cut(s) 45, 80, 123, 147, 163, 225
MaeIII GTNAC 1 cut(s) 145
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MboII GAAGA 1 cut(s) 70
MflI RGATCY 1 cut(s) 69
MluCI AATT 3 cut(s) 51, 126, 186
MlyI GAGTC 1 cut(s) 224
MroI TCCGGA 2 cut(s) 66, 211
MseI TTAA 3 cut(s) 170, 185, 232
MspI CCGG 2 cut(s) 67, 212
NdeII GATC 1 cut(s) 69
NlaIII CATG 1 cut(s) 118
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
PsuI RGATCY 1 cut(s) 69
SaqAI TTAA 3 cut(s) 170, 185, 232
Sau3AI GATC 1 cut(s) 69
SchI GAGTC 1 cut(s) 224
SetI ASST 1 cut(s) 103
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 3 cut(s) 51, 126, 186
StyI CCWWGG 1 cut(s) 11
TaaI ACNGT 1 cut(s) 202
TaqI TCGA 1 cut(s) 154
TasI AATT 3 cut(s) 51, 126, 186
Tru1I TTAA 3 cut(s) 170, 185, 232
Tru9I TTAA 3 cut(s) 170, 185, 232
XapI RAATTY 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.