RchiOBHm_Chr4g0427501

sugar phosphate phosphate translocator

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Reverse (-)
52754915 .. 52755289
375 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 207 bp
ATGCCTCCTCAGCAGTTGATTGGTTTGTGGGTTCTGCGTCCGAAATACTTCAAATTTCCATTGCCCATAACACTTACGATGATTCATATGGGGTTTTCTAGATTGGTAGCATTTTTTCTTGTTCGTGTTTTCAAGGTACGGCTGATCTCTTATTTTTTTATAACGTATTTCTTATATGTGTTAATAACTTTTTGTCATAGTAGTTGA

Protein Analysis

68

Amino Acids

8.19

Weight (kDa)

10.38

Isoelectric Point (pI)

46.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 161
AcsI RAATTY 1 cut(s) 53
AfaI GTAC 1 cut(s) 138
AgsI TTSAA 2 cut(s) 52, 133
ApoI RAATTY 1 cut(s) 53
Asp700I GAANNNNTTC 1 cut(s) 47
BbvCI CCTCAGC 1 cut(s) 9
BceAI ACGGC 1 cut(s) 155
BfaI CTAG 1 cut(s) 99
Bpu10I CCTNAGC 1 cut(s) 9
Bse3DI GCAATG 1 cut(s) 59
BseMI GCAATG 1 cut(s) 59
BseMII CTCAG 1 cut(s) 23
Bsp143I GATC 1 cut(s) 144
BspCNI CTCAG 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 59
BssMI GATC 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 9
BstKTI GATC 1 cut(s) 147
BstMBI GATC 1 cut(s) 144
BstMWI GCNNNNNNNGC 1 cut(s) 10
CseI GACGC 1 cut(s) 26
Csp6I GTAC 1 cut(s) 137
CviJI RGCY 1 cut(s) 142
CviKI_1 RGCY 1 cut(s) 142
CviQI GTAC 1 cut(s) 137
DdeI CTNAG 1 cut(s) 9
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
FaiI YATR 7 cut(s) 68, 87, 89, 161, 175, 177, 198
FauNDI CATATG 1 cut(s) 87
FspBI CTAG 1 cut(s) 99
HgaI GACGC 1 cut(s) 26
HinfI GANTC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 1 cut(s) 99
HpyCH4IV ACGT 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 9
HpySE526I ACGT 1 cut(s) 164
Kzo9I GATC 1 cut(s) 144
MaeI CTAG 1 cut(s) 99
MaeII ACGT 1 cut(s) 164
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MluCI AATT 1 cut(s) 53
MnlI CCTC 2 cut(s) 15, 18
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeI CATATG 1 cut(s) 87
NdeII GATC 1 cut(s) 144
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 1 cut(s) 82
PsiI TTATAA 1 cut(s) 161
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
SaqAI TTAA 1 cut(s) 182
Sau3AI GATC 1 cut(s) 144
SetI ASST 2 cut(s) 138, 167
SgeI CNNG 4 cut(s) 111, 131, 137, 145
Sse9I AATT 1 cut(s) 53
SspMI CTAG 1 cut(s) 99
TaiI ACGT 1 cut(s) 167
TasI AATT 1 cut(s) 53
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 74
XapI RAATTY 1 cut(s) 53
XbaI TCTAGA 1 cut(s) 98
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.