RchiOBHm_Chr4g0428261

separase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Forward (+)
53279451 .. 53281015
1565 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 333 bp
ATGACGTTACCTGTGGAGAATATGCCAATTTTAAGAGGCCGGGAGGTGTATCGTATGCCCTCAGTTACGAGCATTAGTGAAACCATGGGGAAAAACCAATATCGCAAACGTCAAGTTGGAAGTAGTGAGATTCAACGTGTAGATCCTTTAGATGCGTTTGTGCTTATCAATCCAGATACTACTCTGCCACTATGTGGAGACTACTTAGAATGGTATTTAAAGGACAGAGGACTCGAGGTATACACCGGAGTTGAAGTTCAACCTTTTGAAAGATTGGCTGATCTCTTGGGAAAGAAGATATTTACATATATATGGGCCACAATTCCGGTATGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

110

Amino Acids

12.68

Weight (kDa)

5.42

Isoelectric Point (pI)

22.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Separin_C PF03568 2 - 104 1.8e-10 Separin, protease domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 194
AccI GTMKAC 1 cut(s) 240
AclWI GGATC 1 cut(s) 137
AdeI CACNNNGTG 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 194
AflIII ACRYGT 1 cut(s) 136
AgsI TTSAA 4 cut(s) 134, 254, 260, 269
AloI GAACNNNNNNTCC 2 cut(s) 240, 272
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 1 cut(s) 137
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 2 cut(s) 37, 315
AspS9I GGNCC 1 cut(s) 315
AsuC2I CCSGG 1 cut(s) 41
AvaI CYCGRG 1 cut(s) 233
BcnI CCSGG 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 192
Bme1390I CCNGG 1 cut(s) 41
BmeT110I CYCGRG 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 315
BmrFI CCNGG 1 cut(s) 41
BmsI GCATC 1 cut(s) 142
BpuMI CCSGG 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 84
BsaWI WCCGGW 2 cut(s) 245, 325
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
Bsc4I CCNNNNNNNGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 75
BshFI GGCC 2 cut(s) 39, 317
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 3 cut(s) 40, 246, 326
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 192
BsnI GGCC 2 cut(s) 39, 317
BsoBI CYCGRG 1 cut(s) 233
Bsp143I GATC 2 cut(s) 142, 280
Bsp19I CCATGG 1 cut(s) 84
BspANI GGCC 2 cut(s) 39, 317
BspCNI CTCAG 1 cut(s) 74
BspPI GGATC 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 2 cut(s) 142, 280
BssNAI GTATAC 1 cut(s) 241
BssT1I CCWWGG 1 cut(s) 84
Bst1107I GTATAC 1 cut(s) 241
BstDEI CTNAG 2 cut(s) 61, 205
BstDSI CCRYGG 1 cut(s) 84
BstKTI GATC 2 cut(s) 145, 283
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 2 cut(s) 142, 280
BstSCI CCNGG 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BstZ17I GTATAC 1 cut(s) 241
BsuRI GGCC 2 cut(s) 39, 317
BtgI CCRYGG 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 315
CviAII CATG 1 cut(s) 85
CviJI RGCY 3 cut(s) 39, 278, 317
CviKI_1 RGCY 3 cut(s) 39, 278, 317
DdeI CTNAG 2 cut(s) 61, 205
DpnI GATC 2 cut(s) 144, 282
DpnII GATC 2 cut(s) 142, 280
DraI TTTAAA 1 cut(s) 219
DraIII CACNNNGTG 1 cut(s) 194
Eco130I CCWWGG 1 cut(s) 84
Eco88I CYCGRG 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 1 cut(s) 88
FatI CATG 1 cut(s) 84
FblI GTMKAC 1 cut(s) 240
HaeIII GGCC 2 cut(s) 39, 317
HapII CCGG 3 cut(s) 40, 246, 326
Hin1II CATG 1 cut(s) 88
HinfI GANTC 2 cut(s) 130, 231
HpaII CCGG 3 cut(s) 40, 246, 326
Hpy166II GTNNAC 1 cut(s) 241
Hpy188III TCNNGA 1 cut(s) 173
Hpy8I GTNNAC 1 cut(s) 241
HpyCH4IV ACGT 3 cut(s) 5, 109, 136
HpyF3I CTNAG 2 cut(s) 61, 205
HpySE526I ACGT 3 cut(s) 5, 109, 136
Hsp92II CATG 1 cut(s) 88
Kzo9I GATC 2 cut(s) 142, 280
LpnPI CCDG 4 cut(s) 24, 53, 186, 259
LweI GCATC 1 cut(s) 142
MaeII ACGT 3 cut(s) 5, 109, 136
MaeIII GTNAC 2 cut(s) 6, 64
MalI GATC 2 cut(s) 144, 282
MboI GATC 2 cut(s) 142, 280
MboII GAAGA 1 cut(s) 307
MflI RGATCY 1 cut(s) 142
MluCI AATT 2 cut(s) 27, 321
MlyI GAGTC 1 cut(s) 225
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 5 cut(s) 29, 37, 70, 221, 229
MseI TTAA 2 cut(s) 32, 218
MslI CAYNNNNRTG 1 cut(s) 310
MspI CCGG 3 cut(s) 40, 246, 326
MspR9I CCNGG 1 cut(s) 41
NciI CCSGG 1 cut(s) 41
NcoI CCATGG 1 cut(s) 84
NdeII GATC 2 cut(s) 142, 280
NlaIII CATG 1 cut(s) 88
PaeR7I CTCGAG 1 cut(s) 233
PfeI GAWTC 1 cut(s) 130
PflMI CCANNNNNTGG 1 cut(s) 194
PleI GAGTC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 225
PspPI GGNCC 1 cut(s) 315
PspXI VCTCGAGB 1 cut(s) 233
PsuI RGATCY 1 cut(s) 142
RseI CAYNNNNRTG 1 cut(s) 310
SaqAI TTAA 2 cut(s) 32, 218
Sau3AI GATC 2 cut(s) 142, 280
Sau96I GGNCC 1 cut(s) 315
SchI GAGTC 1 cut(s) 225
ScrFI CCNGG 1 cut(s) 41
SetI ASST 7 cut(s) 8, 13, 48, 112, 139, 240, 265
SfaNI GCATC 1 cut(s) 142
Sfr274I CTCGAG 1 cut(s) 233
SlaI CTCGAG 1 cut(s) 233
SmiMI CAYNNNNRTG 1 cut(s) 310
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 2 cut(s) 27, 321
StyD4I CCNGG 1 cut(s) 39
StyI CCWWGG 1 cut(s) 84
TaiI ACGT 3 cut(s) 8, 112, 139
TaqI TCGA 1 cut(s) 234
TasI AATT 2 cut(s) 27, 321
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 2 cut(s) 32, 218
Tru9I TTAA 2 cut(s) 32, 218
Van91I CCANNNNNTGG 1 cut(s) 194
XhoI CTCGAG 1 cut(s) 233
XmiI GTMKAC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.