RchiOBHm_Chr4g0428821

Random slug protein 5-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Forward (+)
53764827 .. 53765702
876 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 288 bp
ATGGAATCCAATGGGAAAGATGAGGGAATGGAAGAGCAACAGAGCTTGGAAAGCAGTGAGATTGAGAAAAGCAAAGTGGGGATCATGAGAGCCCTTGTGGAAAGAGAAGATCCCTCCTCCAAGCATCAGGAAATGAAACTTGATCCTTTCCTGTGTTTGGGATGCAAAAGGAAAGGAAATCGTTTCCTGAAGGAAGGGAAAATTAGGGGGAAAGTGATTCATCCCCTATTCTTTCATTGTATTTATTACTCACAACATATTATTTTATTACATAAACAACTTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

95

Amino Acids

11.04

Weight (kDa)

8.47

Isoelectric Point (pI)

54.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 89, 104, 137
AcuI CTGAAG 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 157
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
AlwI GGATC 3 cut(s) 89, 104, 137
BanII GRGCYC 1 cut(s) 94
BmsI GCATC 2 cut(s) 133, 152
Bsc4I CCNNNNNNNGG 1 cut(s) 157
BseGI GGATG 2 cut(s) 167, 220
BseLI CCNNNNNNNGG 1 cut(s) 157
BseRI GAGGAG 1 cut(s) 106
BslI CCNNNNNNNGG 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 3 cut(s) 81, 109, 142
BspHI TCATGA 1 cut(s) 84
BspPI GGATC 3 cut(s) 89, 104, 137
BspQI GCTCTTC 1 cut(s) 27
BssMI GATC 3 cut(s) 81, 109, 142
Bst6I CTCTTC 1 cut(s) 27
BstF5I GGATG 2 cut(s) 167, 220
BstKTI GATC 3 cut(s) 84, 112, 145
BstMBI GATC 3 cut(s) 81, 109, 142
BstMWI GCNNNNNNNGC 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BtsCI GGATG 2 cut(s) 167, 220
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 61
CciI TCATGA 1 cut(s) 84
CviAII CATG 1 cut(s) 85
CviJI RGCY 2 cut(s) 45, 92
CviKI_1 RGCY 2 cut(s) 45, 92
DpnI GATC 3 cut(s) 83, 111, 144
DpnII GATC 3 cut(s) 81, 109, 142
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 209
EcoT38I GRGCYC 1 cut(s) 94
FaeI CATG 1 cut(s) 88
FaiI YATR 3 cut(s) 86, 258, 273
FatI CATG 1 cut(s) 84
FokI GGATG 2 cut(s) 174, 207
FriOI GRGCYC 1 cut(s) 94
Hin1II CATG 1 cut(s) 88
HinfI GANTC 2 cut(s) 5, 217
Hpy188III TCNNGA 4 cut(s) 85, 128, 187, 285
HpyAV CCTTC 2 cut(s) 184, 188
HpyCH4V TGCA 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 51
Hsp92II CATG 1 cut(s) 88
Kzo9I GATC 3 cut(s) 81, 109, 142
LguI GCTCTTC 1 cut(s) 27
LpnPI CCDG 3 cut(s) 113, 164, 200
LweI GCATC 2 cut(s) 133, 152
MalI GATC 3 cut(s) 83, 111, 144
MboI GATC 3 cut(s) 81, 109, 142
MboII GAAGA 2 cut(s) 44, 119
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 1 cut(s) 201
MnlI CCTC 3 cut(s) 16, 124, 127
MwoI GCNNNNNNNGC 1 cut(s) 51
NdeII GATC 3 cut(s) 81, 109, 142
NlaIII CATG 1 cut(s) 88
PagI TCATGA 1 cut(s) 84
PciSI GCTCTTC 1 cut(s) 27
PfeI GAWTC 2 cut(s) 5, 217
PsuI RGATCY 1 cut(s) 109
SapI GCTCTTC 1 cut(s) 27
Sau3AI GATC 3 cut(s) 81, 109, 142
SduI GDGCHC 1 cut(s) 94
SetI ASST 1 cut(s) 47
SfaNI GCATC 2 cut(s) 133, 152
SgeI CNNG 8 cut(s) 58, 97, 107, 133, 140, 152, 163, 199
Sse9I AATT 1 cut(s) 201
TasI AATT 1 cut(s) 201
TfiI GAWTC 2 cut(s) 5, 217
TscAI CASTG 1 cut(s) 61
TspDTI ATGAA 3 cut(s) 149, 209, 224
TspRI CASTG 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.