Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

54402051 .. 54402909

Gene Structure 859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCCTTCCTCAGTCCAGGTTCTTGCGATCGCAGCTTTCTTCAAATCCAATTGCAGAGGCAACCTAAAGCCACCAAATCGGTCTCCAGGTCCTCCAAGGCCGGCCTCCAATTTCCCTTCGGCTGTATAGCTTGCTTCCTCAAATCTGACAAGTACGCCGAGCGAGTCGGTGCCGGCGCTTTGGTCTATCTCTTCGCTGTCCTCGAATATCTCGCTGCTAGTTATTTGGGTTGGGTCAGGACTAATTGGGTTTGCAATGTTTCCAAGTTTGGTTGCTTGGAAGAGATTGGATTGGTTTGCAATCTAGGTAAGCCAGTCATGCTACTTTCCTATTTCAGGTTCCAGCTTCCCTCTTATTGCTTTCATAGTCTTAGCAAATTCGTTATTTCTGAGAAGCCTTTCGGTATTTCCAAAGGTAACACCTCGCTTCTTGTTTCTCTCAATTCTCAAAACAAAATCACTACTTTTCTGACTTCTGTGCTTCCTTCAGAGCTTACCCAATTTGTGTTTTTGCTTTTTTATTACAATTTCATATTAAATCTTGATACTTTCCATGATAGAACTGCGTTGAAGTGTCCCAAATTTGCATTTTTTTATTCAGACGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

202

Amino Acids

22.76

Weight (kDa)

9.21

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	170
AcsI	RAATTY	2 cut(s)	377, 581
AcuI	CTGAAG	1 cut(s)	471
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	336
AgsI	TTSAA	2 cut(s)	44, 571
AjnI	CCWGG	2 cut(s)	16, 86
AluBI	AGCT	4 cut(s)	36, 131, 346, 493
AluI	AGCT	4 cut(s)	36, 131, 346, 493
Alw26I	GTCTC	1 cut(s)	88
AoxI	GGCC	3 cut(s)	3, 99, 103
ApeKI	GCWGC	2 cut(s)	33, 215
ApoI	RAATTY	2 cut(s)	377, 581
AsiSI	GCGATCGC	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	90
AvaII	GGWCC	1 cut(s)	90
BanI	GGYRCC	1 cut(s)	170
BbvI	GCAGC	2 cut(s)	45, 202
BciT130I	CCWGG	2 cut(s)	18, 88
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	2 cut(s)	219, 305
BfoI	RGCGCY	1 cut(s)	180
BisI	GCNGC	2 cut(s)	34, 216
BlsI	GCNGC	2 cut(s)	35, 217
Bme1390I	CCNGG	2 cut(s)	18, 88
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	90
BmiI	GGNNCC	2 cut(s)	172, 341
BmrFI	CCNGG	2 cut(s)	18, 88
BpmI	CTGGAG	1 cut(s)	70
BsaI	GGTCTC	1 cut(s)	88
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	336
Bse118I	RCCGGY	2 cut(s)	101, 173
Bse1I	ACTGG	1 cut(s)	314
Bse3DI	GCAATG	1 cut(s)	262
BseBI	CCWGG	2 cut(s)	18, 88
BseDI	CCNNGG	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	336
BseMI	GCAATG	1 cut(s)	262
BseMII	CTCAG	2 cut(s)	25, 381
BseNI	ACTGG	1 cut(s)	314
BseXI	GCAGC	2 cut(s)	45, 202
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	3 cut(s)	5, 101, 105
BshNI	GGYRCC	1 cut(s)	170
BsiEI	CGRYCG	1 cut(s)	31
BsiSI	CCGG	2 cut(s)	102, 174
BslFI	GGGAC	1 cut(s)	561
BslI	CCNNNNNNNGG	1 cut(s)	336
BsmAI	GTCTC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	561
BsnI	GGCC	3 cut(s)	5, 101, 105
Bso31I	GGTCTC	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	28
BspANI	GGCC	3 cut(s)	5, 101, 105
BspCNI	CTCAG	2 cut(s)	24, 382
BspLI	GGNNCC	2 cut(s)	172, 341
BspT107I	GGYRCC	1 cut(s)	170
BspTNI	GGTCTC	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	262
BsrFI	RCCGGY	2 cut(s)	101, 173
BsrI	ACTGG	1 cut(s)	314
BssAI	RCCGGY	2 cut(s)	101, 173
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	1 cut(s)	28
BssT1I	CCWWGG	1 cut(s)	96
Bst2UI	CCWGG	2 cut(s)	18, 88
Bst6I	CTCTTC	2 cut(s)	197, 276
BstC8I	GCNNGC	3 cut(s)	103, 133, 175
BstDEI	CTNAG	3 cut(s)	11, 371, 390
BstENI	CCTNNNNNAGG	1 cut(s)	334
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	1 cut(s)	31
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	28
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 319
BstNI	CCWGG	2 cut(s)	18, 88
BstSCI	CCNGG	2 cut(s)	16, 86
BstV1I	GCAGC	2 cut(s)	45, 202
BsuRI	GGCC	3 cut(s)	5, 101, 105
Cac8I	GCNNGC	3 cut(s)	103, 133, 175
CfoI	GCGC	1 cut(s)	179
Cfr10I	RCCGGY	2 cut(s)	101, 173
Cfr13I	GGNCC	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	2 cut(s)	319, 554
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	3 cut(s)	11, 371, 390
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
Eam1104I	CTCTTC	2 cut(s)	197, 276
EarI	CTCTTC	2 cut(s)	197, 276
Eco130I	CCWWGG	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	471
EcoNI	CCTNNNNNAGG	1 cut(s)	334
EcoO109I	RGGNCCY	1 cut(s)	90
EcoRII	CCWGG	2 cut(s)	16, 86
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	2 cut(s)	322, 557
FaiI	YATR	6 cut(s)	128, 320, 366, 533, 555, 607
FaqI	GGGAC	1 cut(s)	561
FatI	CATG	2 cut(s)	318, 553
Fnu4HI	GCNGC	2 cut(s)	34, 216
FseI	GGCCGGCC	1 cut(s)	105
Fsp4HI	GCNGC	2 cut(s)	34, 216
FspBI	CTAG	2 cut(s)	219, 305
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	2 cut(s)	34, 216
GsuI	CTGGAG	1 cut(s)	70
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	3 cut(s)	5, 101, 105
HapII	CCGG	2 cut(s)	102, 174
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	2 cut(s)	322, 557
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HinfI	GANTC	1 cut(s)	165
HpaII	CCGG	2 cut(s)	102, 174
Hpy188I	TCNGA	5 cut(s)	148, 391, 471, 490, 601
Hpy188III	TCNNGA	2 cut(s)	238, 542
HpyAV	CCTTC	3 cut(s)	16, 127, 495
HpyCH4V	TGCA	4 cut(s)	55, 255, 300, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 319
HpyF3I	CTNAG	3 cut(s)	11, 371, 390
Hsp92II	CATG	2 cut(s)	322, 557
HspAI	GCGC	1 cut(s)	177
KroI	GCCGGC	2 cut(s)	101, 173
KroNI	GCCGGC	2 cut(s)	103, 175
Kzo9I	GATC	1 cut(s)	28
Lsp1109I	GCAGC	2 cut(s)	45, 202
MaeI	CTAG	2 cut(s)	219, 305
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MboII	GAAGA	3 cut(s)	32, 184, 293
MfeI	CAATTG	1 cut(s)	50
MluCI	AATT	8 cut(s)	50, 110, 244, 377, 442, 500, 526, 581
MlyI	GAGTC	1 cut(s)	174
MnlI	CCTC	8 cut(s)	20, 51, 103, 116, 149, 212, 361, 433
MroNI	GCCGGC	2 cut(s)	101, 173
MroXI	GAANNNNTTC	1 cut(s)	398
MseI	TTAA	1 cut(s)	536
MspI	CCGG	2 cut(s)	102, 174
MspR9I	CCNGG	2 cut(s)	18, 88
MunI	CAATTG	1 cut(s)	50
MvaI	CCWGG	2 cut(s)	18, 88
MwoI	GCNNNNNNNGC	2 cut(s)	33, 319
NaeI	GCCGGC	2 cut(s)	103, 175
NdeII	GATC	1 cut(s)	28
NgoMIV	GCCGGC	2 cut(s)	101, 173
NlaIII	CATG	2 cut(s)	322, 557
NlaIV	GGNNCC	2 cut(s)	172, 341
NmeAIII	GCCGAG	1 cut(s)	184
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PdiI	GCCGGC	2 cut(s)	103, 175
PdmI	GAANNNNTTC	1 cut(s)	398
PkrI	GCNGC	2 cut(s)	35, 217
Ple19I	CGATCG	1 cut(s)	31
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PpuMI	RGGWCCY	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	90
Psp6I	CCWGG	2 cut(s)	16, 86
PspGI	CCWGG	2 cut(s)	16, 86
PspN4I	GGNNCC	2 cut(s)	172, 341
PspPI	GGNCC	1 cut(s)	90
PspPPI	RGGWCCY	1 cut(s)	90
PvuI	CGATCG	1 cut(s)	31
RgaI	GCGATCGC	1 cut(s)	31
RigI	GGCCGGCC	1 cut(s)	105
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	536
SatI	GCNGC	2 cut(s)	34, 216
Sau3AI	GATC	1 cut(s)	28
Sau96I	GGNCC	1 cut(s)	90
SchI	GAGTC	1 cut(s)	174
ScrFI	CCNGG	2 cut(s)	18, 88
SfaAI	GCGATCGC	1 cut(s)	31
SgfI	GCGATCGC	1 cut(s)	31
SinI	GGWCC	1 cut(s)	90
Sse9I	AATT	8 cut(s)	50, 110, 244, 377, 442, 500, 526, 581
SspMI	CTAG	2 cut(s)	219, 305
StyD4I	CCNGG	2 cut(s)	16, 86
StyI	CCWWGG	1 cut(s)	96
TaqI	TCGA	1 cut(s)	204
TaqII	GACCGA	1 cut(s)	70
TasI	AATT	8 cut(s)	50, 110, 244, 377, 442, 500, 526, 581
Tru1I	TTAA	1 cut(s)	536
Tru9I	TTAA	1 cut(s)	536
TseI	GCWGC	2 cut(s)	33, 215
TspDTI	ATGAA	2 cut(s)	353, 520
VpaK11BI	GGWCC	1 cut(s)	90
XagI	CCTNNNNNAGG	1 cut(s)	334
XapI	RAATTY	2 cut(s)	377, 581
XmnI	GAANNNNTTC	1 cut(s)	398
XspI	CTAG	2 cut(s)	219, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.