RchiOBHm_Chr4g0429981

nuclear transport factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Reverse (-)
54671814 .. 54672470
657 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 327 bp
ATGCTGACTTTTGAAGGTGAAGAGATCCAAGGGTCGCAGAAGATTGCAGCCAAGCTCACCGGCCTCCGTTTCCAGCAATGCTGGCACCACATCAGCACCATCGATTGCCAGCCATCCGCTGGCGATGGCATGCTCGTCTTTGTCAGTGGCGCTCTCCAACTTCCTGGTGAACAGCCCCCTTTAAAATTCAGCCAGGTTCGTACTCTGTTTTCTTTCTGGTTACTCACACATTCATCGTTAATAGTTGTTCTGTTTTGTTTATTTTCGGTGCTTTTCTGTCCCTTGGATTCAAAGATCTTATCTATTTGCATTTTCAATTTTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTF2

Protein Analysis

108

Amino Acids

12.08

Weight (kDa)

6.24

Isoelectric Point (pI)

44.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTF2 PF02136 1 - 67 3.4e-14 Nuclear transport factor 2 (NTF2) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 84
AccB7I CCANNNNNTGG 1 cut(s) 119
AciI CCGC 1 cut(s) 117
AclWI GGATC 1 cut(s) 19
AcsI RAATTY 1 cut(s) 185
AfaI GTAC 1 cut(s) 202
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 3 cut(s) 14, 291, 316
AjnI CCWGG 2 cut(s) 163, 192
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
AlwI GGATC 1 cut(s) 19
AoxI GGCC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 185
AspLEI GCGC 1 cut(s) 152
AsuHPI GGTGA 3 cut(s) 29, 49, 179
BanI GGYRCC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 59
BccI CCATC 3 cut(s) 107, 119, 121
BciT130I CCWGG 2 cut(s) 165, 194
BfoI RGCGCY 1 cut(s) 153
BglII AGATCT 1 cut(s) 294
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 2 cut(s) 165, 194
BmiI GGNNCC 1 cut(s) 86
BmrFI CCNGG 2 cut(s) 165, 194
Bsa29I ATCGAT 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 28, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse118I RCCGGY 1 cut(s) 59
Bse3DI GCAATG 1 cut(s) 83
BseBI CCWGG 2 cut(s) 165, 194
BseCI ATCGAT 1 cut(s) 102
BseDI CCNNGG 2 cut(s) 28, 282
BseGI GGATG 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 59
BshFI GGCC 1 cut(s) 63
BshNI GGYRCC 1 cut(s) 84
BshVI ATCGAT 1 cut(s) 102
BsiSI CCGG 1 cut(s) 60
BslFI GGGAC 1 cut(s) 264
BslI CCNNNNNNNGG 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 264
BsnI GGCC 1 cut(s) 63
Bsp143I GATC 2 cut(s) 24, 294
BspACI CCGC 1 cut(s) 117
BspANI GGCC 1 cut(s) 63
BspDI ATCGAT 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 86
BspPI GGATC 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 59
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 28, 282
BssMI GATC 2 cut(s) 24, 294
BssT1I CCWWGG 2 cut(s) 28, 282
Bst2UI CCWGG 2 cut(s) 165, 194
Bst6I CTCTTC 1 cut(s) 15
BstC8I GCNNGC 4 cut(s) 83, 110, 121, 131
BstF5I GGATG 1 cut(s) 113
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 2 cut(s) 27, 297
BstMBI GATC 2 cut(s) 24, 294
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstNI CCWGG 2 cut(s) 165, 194
BstNSI RCATGY 1 cut(s) 133
BstSCI CCNGG 2 cut(s) 163, 192
BstV1I GCAGC 1 cut(s) 59
BstX2I RGATCY 2 cut(s) 24, 294
BstXI CCANNNNNNTGG 1 cut(s) 164
BstYI RGATCY 2 cut(s) 24, 294
Bsu15I ATCGAT 1 cut(s) 102
BsuRI GGCC 1 cut(s) 63
BsuTUI ATCGAT 1 cut(s) 102
BtgZI GCGATG 1 cut(s) 138
BtsCI GGATG 1 cut(s) 113
BtsIMutI CAGTG 1 cut(s) 151
Cac8I GCNNGC 4 cut(s) 83, 110, 121, 131
CfoI GCGC 1 cut(s) 152
Cfr10I RCCGGY 1 cut(s) 59
ClaI ATCGAT 1 cut(s) 102
Csp6I GTAC 1 cut(s) 201
CviAII CATG 1 cut(s) 130
CviJI RGCY 6 cut(s) 50, 55, 63, 112, 175, 192
CviKI_1 RGCY 6 cut(s) 50, 55, 63, 112, 175, 192
CviQI GTAC 1 cut(s) 201
DpnI GATC 2 cut(s) 26, 296
DpnII GATC 2 cut(s) 24, 294
DraI TTTAAA 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco130I CCWWGG 2 cut(s) 28, 282
EcoRII CCWGG 2 cut(s) 163, 192
EcoT14I CCWWGG 2 cut(s) 28, 282
ErhI CCWWGG 2 cut(s) 28, 282
FaeI CATG 1 cut(s) 133
FaiI YATR 1 cut(s) 131
FaqI GGGAC 1 cut(s) 264
FatI CATG 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 1 cut(s) 100
Fsp4HI GCNGC 1 cut(s) 48
GlaI GCGC 1 cut(s) 151
GluI GCNGC 1 cut(s) 48
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 1 cut(s) 63
HapII CCGG 1 cut(s) 60
HhaI GCGC 1 cut(s) 152
Hin1II CATG 1 cut(s) 133
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HinfI GANTC 1 cut(s) 287
HpaII CCGG 1 cut(s) 60
HphI GGTGA 3 cut(s) 29, 49, 179
Hpy166II GTNNAC 1 cut(s) 170
Hpy188I TCNGA 1 cut(s) 326
Hpy8I GTNNAC 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 8
HpyCH4V TGCA 2 cut(s) 47, 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
Hsp92II CATG 1 cut(s) 133
HspAI GCGC 1 cut(s) 150
Kzo9I GATC 2 cut(s) 24, 294
Lsp1109I GCAGC 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 219
MalI GATC 2 cut(s) 26, 296
MboI GATC 2 cut(s) 24, 294
MboII GAAGA 2 cut(s) 32, 52
MflI RGATCY 2 cut(s) 24, 294
MluCI AATT 2 cut(s) 185, 316
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 1 cut(s) 74
MseI TTAA 2 cut(s) 182, 239
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 2 cut(s) 165, 194
MvaI CCWGG 2 cut(s) 165, 194
MwoI GCNNNNNNNGC 1 cut(s) 82
NdeII GATC 2 cut(s) 24, 294
NlaIII CATG 1 cut(s) 133
NlaIV GGNNCC 1 cut(s) 86
NspI RCATGY 1 cut(s) 133
PaeI GCATGC 1 cut(s) 133
PfeI GAWTC 1 cut(s) 287
PflMI CCANNNNNTGG 1 cut(s) 119
PkrI GCNGC 1 cut(s) 49
Psp6I CCWGG 2 cut(s) 163, 192
PspGI CCWGG 2 cut(s) 163, 192
PspN4I GGNNCC 1 cut(s) 86
PsuI RGATCY 2 cut(s) 24, 294
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SaqAI TTAA 2 cut(s) 182, 239
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 2 cut(s) 24, 294
ScrFI CCNGG 2 cut(s) 165, 194
SetI ASST 3 cut(s) 19, 57, 198
SphI GCATGC 1 cut(s) 133
Sse9I AATT 2 cut(s) 185, 316
SsiI CCGC 1 cut(s) 117
StyD4I CCNGG 2 cut(s) 163, 192
StyI CCWWGG 2 cut(s) 28, 282
TaqI TCGA 1 cut(s) 102
TasI AATT 2 cut(s) 185, 316
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 2 cut(s) 182, 239
Tru9I TTAA 2 cut(s) 182, 239
TscAI CASTG 1 cut(s) 151
TseI GCWGC 1 cut(s) 47
TspDTI ATGAA 1 cut(s) 222
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 1 cut(s) 151
Van91I CCANNNNNTGG 1 cut(s) 119
XapI RAATTY 1 cut(s) 185
XceI RCATGY 1 cut(s) 133
XcmI CCANNNNNNNNNTGG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.