Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

54882982 .. 54883855

Gene Structure 874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGTTGTGGCACAAAAACTGAAGGAGGCGGAGATCACCGAGCAGGATTCGCTTCTTCTGACGAGGAACCTGCTTCGCATCGCTATATTCAATATCAGTTACATCAGAGGCCTTTTTCCGGAGAAGTATTTCAATGATAAATCTGTTCCTGCTTTAGAGATGAAGATTAAAAAGCTAATGCCAATGGATGCAGAGTCTCGCAGACTTATTGATTGGATGGAGAAAGAAGAAATACCTGAAAACGCTTTTGTTCTGTGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043934 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0048229 GO:0048236 GO:0048285 GO:0048856 GO:0048869 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070013 GO:0070192 GO:0071840 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HORMA

Protein Analysis

87

Amino Acids

10.22

Weight (kDa)

5.47

Isoelectric Point (pI)

56.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HORMA	PF02301	17 - 75	6.8e-14	HORMA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	78
AccIII	TCCGGA	1 cut(s)	118
AciI	CCGC	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	2 cut(s)	91, 133
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
Alw26I	GTCTC	1 cut(s)	201
Aor13HI	TCCGGA	1 cut(s)	118
AoxI	GGCC	1 cut(s)	109
Asp700I	GAANNNNTTC	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	28
BccI	CCATC	1 cut(s)	211
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BcoDI	GTCTC	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	68
BmsI	GCATC	2 cut(s)	87, 178
BsaWI	WCCGGW	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
BseAI	TCCGGA	1 cut(s)	118
BseGI	GGATG	2 cut(s)	193, 222
BseLI	CCNNNNNNNGG	1 cut(s)	118
BshFI	GGCC	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	111
Bsp13I	TCCGGA	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	33
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	1 cut(s)	111
BspEI	TCCGGA	1 cut(s)	118
BspLI	GGNNCC	1 cut(s)	68
BspMI	ACCTGC	1 cut(s)	78
BssMI	GATC	1 cut(s)	33
BstF5I	GGATG	2 cut(s)	193, 222
BstKTI	GATC	1 cut(s)	36
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	33
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	111
BtgZI	GCGATG	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	193, 222
BveI	ACCTGC	1 cut(s)	78
CviJI	RGCY	2 cut(s)	111, 175
CviKI_1	RGCY	2 cut(s)	111, 175
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
EciI	GGCGGA	1 cut(s)	44
Eco147I	AGGCCT	1 cut(s)	111
Eco57I	CTGAAG	1 cut(s)	41
FaiI	YATR	1 cut(s)	86
FokI	GGATG	2 cut(s)	200, 229
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	1 cut(s)	119
HinfI	GANTC	2 cut(s)	47, 194
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	2 cut(s)	60, 107
Hpy188III	TCNNGA	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	16
HpyCH4V	TGCA	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
Kpn2I	TCCGGA	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	33
LpnPI	CCDG	5 cut(s)	29, 83, 132, 162, 249
LweI	GCATC	2 cut(s)	87, 178
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MboII	GAAGA	3 cut(s)	47, 175, 239
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	3 cut(s)	19, 57, 101
MroI	TCCGGA	1 cut(s)	118
MroXI	GAANNNNTTC	1 cut(s)	128
MseI	TTAA	1 cut(s)	168
MspI	CCGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	49
NdeII	GATC	1 cut(s)	33
NlaIV	GGNNCC	1 cut(s)	68
PceI	AGGCCT	1 cut(s)	111
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	47
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	168
Sau3AI	GATC	1 cut(s)	33
SchI	GAGTC	1 cut(s)	203
SetI	ASST	3 cut(s)	72, 177, 238
SfaNI	GCATC	2 cut(s)	87, 178
SgeI	CNNG	8 cut(s)	52, 56, 75, 82, 131, 161, 210, 248
SseBI	AGGCCT	1 cut(s)	111
SsiI	CCGC	1 cut(s)	29
StuI	AGGCCT	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TspDTI	ATGAA	1 cut(s)	176
XmnI	GAANNNNTTC	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.