RchiOBHm_Chr4g0432831

amine oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Reverse (-)
56864712 .. 56867817
3106 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 927 bp
ATGGATTTAATTTGTGTATCATTGGAAATAATCACTTGCATCAGGTGTTCTAGATGCCTCTACTGTAATGGGGTACACAAACATCTTGAGGAAACATTTGAATTTCTCTGCCGTAATAAAATCTGTGATGGGAAAATTGAAGCTGAGGTGAGACTTACAGGAATTCTAAGCTTAGGTGCGCTTCAACCAGGAGAAACCCGAAAGTATGGTACAACTATTGCACCTGGACTATATGCTCCTGTACATCAACACTTTTTTGTTGCTCGTATGGACATGGCAGTTGATAGTAAGCCTGGTGAAACTTTTAATCAGGTGGTTGAAGTAAATGTTAAAGTTGAAGAACCAGGAAAGAACAATGTTCATAACAATGCATTCTATGCTGAGGAGAAACTTCTGAAATCAGAATTGCAAGCAATGCGTGATTGTAATCCTTTATCTGCTCGCCATTGGATTGTTAGGCACACAAGAAATGTCAACCGGACAGGACAGCTAACAGGTTACAAGCTGGTACCTGGTTCAAATTGTTTACCATTAGCCGGTTCTGAGGCAAAGTTTCTGAGAAGAGCTGCTTTTTTGAAGCATAATCTTTGGGTCACGTCCTATGCACGTGATGAAATGTATCCTGGAGGAGAATTTCCTAATCAAAATCCACGTATTGGGGAGGGATTAGCCACTTGGGTTCAGCAAGATCGGTCTCTGGAAGAAGCTGACATTGTTCTTTGGTATGTATTTGGAGTGACCCACATTCCTCGACTGGAAGACTGGCCGGTCATGCCTGTGGAACATATTGGTTTTACGCTCATGCCACATGGTTTCTTTAACTGCTCAACGGCGGTGGACGTCCCTCCGAATACATGTGAGATGGACCTCAAGGAAAATGAGATGGCTGCAAAACCTATTCAGAATGGTCTTATAGCCAAGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110
Pfam Domains
Protein Families
Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

308

Amino Acids

34.76

Weight (kDa)

6.27

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_amine_oxid PF01179 43 - 277 1.4e-71 Copper amine oxidase, enzyme domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 767
AatII GACGTC 1 cut(s) 843
Acc65I GGTACC 1 cut(s) 508
AccB1I GGYRCC 1 cut(s) 508
AccB7I CCANNNNNTGG 1 cut(s) 656
AciI CCGC 1 cut(s) 833
AcoI YGGCCR 1 cut(s) 764
AcsI RAATTY 3 cut(s) 101, 162, 632
AcvI CACGTG 1 cut(s) 608
AcyI GRCGYC 1 cut(s) 840
AfaI GTAC 4 cut(s) 75, 211, 243, 510
AfiI CCNNNNNNNGG 2 cut(s) 536, 656
AflIII ACRYGT 1 cut(s) 854
AgsI TTSAA 7 cut(s) 101, 140, 185, 320, 338, 519, 577
AjiI CACGTC 1 cut(s) 597
AjnI CCWGG 6 cut(s) 187, 223, 292, 343, 511, 622
AluBI AGCT 7 cut(s) 143, 171, 490, 505, 566, 707, 922
AluI AGCT 7 cut(s) 143, 171, 490, 505, 566, 707, 922
Alw26I GTCTC 2 cut(s) 145, 699
AoxI GGCC 1 cut(s) 764
ApeKI GCWGC 2 cut(s) 566, 887
ApoI RAATTY 3 cut(s) 101, 162, 632
Asp718I GGTACC 1 cut(s) 508
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 1 cut(s) 865
AsuHPI GGTGA 2 cut(s) 160, 308
AvaII GGWCC 1 cut(s) 865
BanI GGYRCC 1 cut(s) 508
BbrPI CACGTG 1 cut(s) 608
BbsI GAAGAC 1 cut(s) 765
BbvCI CCTCAGC 2 cut(s) 144, 381
BbvI GCAGC 2 cut(s) 553, 874
BccI CCATC 3 cut(s) 122, 856, 877
BceAI ACGGC 2 cut(s) 96, 846
BciT130I CCWGG 6 cut(s) 189, 225, 294, 345, 513, 624
BciVI GTATCC 1 cut(s) 630
BcoDI GTCTC 2 cut(s) 145, 699
BfaI CTAG 1 cut(s) 51
BfuI GTATCC 1 cut(s) 630
BisI GCNGC 2 cut(s) 567, 888
BlsI GCNGC 2 cut(s) 568, 889
Bme1390I CCNGG 6 cut(s) 189, 225, 294, 345, 513, 624
Bme18I GGWCC 1 cut(s) 865
BmgBI CACGTC 1 cut(s) 597
BmgT120I GGNCC 1 cut(s) 865
BmiI GGNNCC 1 cut(s) 510
BmrFI CCNGG 6 cut(s) 189, 225, 294, 345, 513, 624
BmsI GCATC 2 cut(s) 44, 48
BpiI GAAGAC 1 cut(s) 765
BpmI CTGGAG 1 cut(s) 645
Bpu10I CCTNAGC 3 cut(s) 144, 172, 381
BpuEI CTTGAG 2 cut(s) 107, 854
BsaAI YACGTR 2 cut(s) 608, 653
BsaBI GATNNNNATC 1 cut(s) 426
BsaHI GRCGYC 1 cut(s) 840
BsaI GGTCTC 1 cut(s) 699
BsaWI WCCGGW 1 cut(s) 477
Bsc4I CCNNNNNNNGG 2 cut(s) 536, 656
Bse118I RCCGGY 2 cut(s) 536, 766
Bse1I ACTGG 2 cut(s) 759, 767
Bse3DI GCAATG 1 cut(s) 420
Bse8I GATNNNNATC 1 cut(s) 426
BseBI CCWGG 6 cut(s) 189, 225, 294, 345, 513, 624
BseJI GATNNNNATC 1 cut(s) 426
BseLI CCNNNNNNNGG 2 cut(s) 536, 656
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 4 cut(s) 135, 372, 534, 548
BseNI ACTGG 2 cut(s) 759, 767
BseRI GAGGAG 2 cut(s) 398, 642
BseXI GCAGC 2 cut(s) 553, 874
BshFI GGCC 1 cut(s) 766
BshNI GGYRCC 1 cut(s) 508
BsiSI CCGG 3 cut(s) 478, 537, 767
BslFI GGGAC 1 cut(s) 827
BslI CCNNNNNNNGG 2 cut(s) 536, 656
BsmAI GTCTC 2 cut(s) 145, 699
BsmFI GGGAC 1 cut(s) 827
BsmI GAATGC 1 cut(s) 371
BsnI GGCC 1 cut(s) 766
Bso31I GGTCTC 1 cut(s) 699
Bsp1407I TGTACA 1 cut(s) 241
Bsp143I GATC 1 cut(s) 688
BspACI CCGC 1 cut(s) 833
BspANI GGCC 1 cut(s) 766
BspCNI CTCAG 4 cut(s) 136, 373, 535, 549
BspLI GGNNCC 1 cut(s) 510
BspQI GCTCTTC 1 cut(s) 556
BspT107I GGYRCC 1 cut(s) 508
BspTNI GGTCTC 1 cut(s) 699
BsrDI GCAATG 1 cut(s) 420
BsrFI RCCGGY 2 cut(s) 536, 766
BsrGI TGTACA 1 cut(s) 241
BsrI ACTGG 2 cut(s) 759, 767
BssAI RCCGGY 2 cut(s) 536, 766
BssMI GATC 1 cut(s) 688
BssNI GRCGYC 1 cut(s) 840
Bst2UI CCWGG 6 cut(s) 189, 225, 294, 345, 513, 624
Bst4CI ACNGT 1 cut(s) 65
Bst6I CTCTTC 1 cut(s) 556
BstACI GRCGYC 1 cut(s) 840
BstAPI GCANNNNNTGC 2 cut(s) 377, 415
BstAUI TGTACA 1 cut(s) 241
BstBAI YACGTR 2 cut(s) 608, 653
BstC8I GCNNGC 2 cut(s) 411, 442
BstDEI CTNAG 6 cut(s) 144, 167, 172, 381, 543, 557
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 1 cut(s) 691
BstMAI GTCTC 2 cut(s) 145, 699
BstMBI GATC 1 cut(s) 688
BstMWI GCNNNNNNNGC 3 cut(s) 377, 415, 772
BstNI CCWGG 6 cut(s) 189, 225, 294, 345, 513, 624
BstNSI RCATGY 1 cut(s) 858
BstSCI CCNGG 6 cut(s) 187, 223, 292, 343, 511, 622
BstV1I GCAGC 2 cut(s) 553, 874
BstV2I GAAGAC 1 cut(s) 765
BsuI GTATCC 1 cut(s) 630
BsuRI GGCC 1 cut(s) 766
BtrI CACGTC 1 cut(s) 597
Cac8I GCNNGC 2 cut(s) 411, 442
CfoI GCGC 1 cut(s) 181
Cfr10I RCCGGY 2 cut(s) 536, 766
Cfr13I GGNCC 1 cut(s) 865
CsiI ACCWGGT 1 cut(s) 511
Csp6I GTAC 4 cut(s) 74, 210, 242, 509
CspCI CAANNNNNGTGG 2 cut(s) 816, 851
CviAII CATG 5 cut(s) 274, 772, 802, 809, 855
CviQI GTAC 4 cut(s) 74, 210, 242, 509
DdeI CTNAG 6 cut(s) 144, 167, 172, 381, 543, 557
DpnI GATC 1 cut(s) 690
DpnII GATC 1 cut(s) 688
DrdI GACNNNNNNGTC 1 cut(s) 767
DseDI GACNNNNNNGTC 1 cut(s) 767
EaeI YGGCCR 1 cut(s) 764
Eam1104I CTCTTC 1 cut(s) 556
EarI CTCTTC 1 cut(s) 556
Eco31I GGTCTC 1 cut(s) 699
Eco47I GGWCC 1 cut(s) 865
Eco72I CACGTG 1 cut(s) 608
EcoRI GAATTC 1 cut(s) 162
EcoRII CCWGG 6 cut(s) 187, 223, 292, 343, 511, 622
EcoT22I ATGCAT 1 cut(s) 373
FaeI CATG 5 cut(s) 277, 775, 805, 812, 858
FalI AAGNNNNNCTT 2 cut(s) 553, 585
FaqI GGGAC 1 cut(s) 827
FatI CATG 5 cut(s) 273, 771, 801, 808, 854
Fnu4HI GCNGC 2 cut(s) 567, 888
Fsp4HI GCNGC 2 cut(s) 567, 888
FspBI CTAG 1 cut(s) 51
GlaI GCGC 1 cut(s) 180
GluI GCNGC 2 cut(s) 567, 888
GsuI CTGGAG 1 cut(s) 645
HaeIII GGCC 1 cut(s) 766
HapII CCGG 3 cut(s) 478, 537, 767
HhaI GCGC 1 cut(s) 181
Hin1I GRCGYC 1 cut(s) 840
Hin1II CATG 5 cut(s) 277, 775, 805, 812, 858
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HincII GTYRAC 1 cut(s) 475
HindII GTYRAC 1 cut(s) 475
HindIII AAGCTT 1 cut(s) 169
HpaII CCGG 3 cut(s) 478, 537, 767
HphI GGTGA 2 cut(s) 160, 308
Hpy166II GTNNAC 4 cut(s) 76, 475, 527, 838
Hpy188I TCNGA 7 cut(s) 396, 403, 544, 558, 849, 903, 926
Hpy188III TCNNGA 3 cut(s) 51, 86, 698
Hpy8I GTNNAC 4 cut(s) 76, 475, 527, 838
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4IV ACGT 4 cut(s) 596, 607, 652, 840
HpyCH4V TGCA 6 cut(s) 39, 221, 371, 409, 605, 890
HpyF10VI GCNNNNNNNGC 3 cut(s) 377, 415, 772
HpyF3I CTNAG 6 cut(s) 144, 167, 172, 381, 543, 557
HpySE526I ACGT 4 cut(s) 596, 607, 652, 840
Hsp92I GRCGYC 1 cut(s) 840
Hsp92II CATG 5 cut(s) 277, 775, 805, 812, 858
HspAI GCGC 1 cut(s) 179
KpnI GGTACC 1 cut(s) 512
Kzo9I GATC 1 cut(s) 688
LguI GCTCTTC 1 cut(s) 556
LmnI GCTCC 1 cut(s) 241
Lsp1109I GCAGC 2 cut(s) 553, 874
LweI GCATC 2 cut(s) 44, 48
MabI ACCWGGT 1 cut(s) 511
MaeI CTAG 1 cut(s) 51
MaeII ACGT 4 cut(s) 596, 607, 652, 840
MaeIII GTNAC 3 cut(s) 497, 592, 736
MalI GATC 1 cut(s) 690
MboI GATC 1 cut(s) 688
MboII GAAGA 4 cut(s) 350, 573, 713, 770
MluCI AATT 7 cut(s) 9, 101, 135, 162, 404, 520, 632
Mph1103I ATGCAT 1 cut(s) 373
MseI TTAA 4 cut(s) 8, 306, 330, 819
MslI CAYNNNNRTG 2 cut(s) 366, 776
MspI CCGG 3 cut(s) 478, 537, 767
MspR9I CCNGG 6 cut(s) 189, 225, 294, 345, 513, 624
Mva1269I GAATGC 1 cut(s) 371
MvaI CCWGG 6 cut(s) 189, 225, 294, 345, 513, 624
MwoI GCNNNNNNNGC 3 cut(s) 377, 415, 772
NdeII GATC 1 cut(s) 688
NlaIII CATG 5 cut(s) 277, 775, 805, 812, 858
NlaIV GGNNCC 1 cut(s) 510
NmuCI GTSAC 2 cut(s) 592, 736
NsiI ATGCAT 1 cut(s) 373
NspI RCATGY 1 cut(s) 858
PciI ACATGT 1 cut(s) 854
PciSI GCTCTTC 1 cut(s) 556
PctI GAATGC 1 cut(s) 371
PflMI CCANNNNNTGG 1 cut(s) 656
PfoI TCCNGGA 1 cut(s) 622
PkrI GCNGC 2 cut(s) 568, 889
PmaCI CACGTG 1 cut(s) 608
PmlI CACGTG 1 cut(s) 608
Ppu21I YACGTR 2 cut(s) 608, 653
PscI ACATGT 1 cut(s) 854
Psp6I CCWGG 6 cut(s) 187, 223, 292, 343, 511, 622
PspCI CACGTG 1 cut(s) 608
PspGI CCWGG 6 cut(s) 187, 223, 292, 343, 511, 622
PspN4I GGNNCC 1 cut(s) 510
PspPI GGNCC 1 cut(s) 865
RsaI GTAC 4 cut(s) 75, 211, 243, 510
RsaNI GTAC 4 cut(s) 74, 210, 242, 509
RseI CAYNNNNRTG 2 cut(s) 366, 776
SapI GCTCTTC 1 cut(s) 556
SaqAI TTAA 4 cut(s) 8, 306, 330, 819
SatI GCNGC 2 cut(s) 567, 888
Sau3AI GATC 1 cut(s) 688
Sau96I GGNCC 1 cut(s) 865
ScrFI CCNGG 6 cut(s) 189, 225, 294, 345, 513, 624
SexAI ACCWGGT 1 cut(s) 511
SfaNI GCATC 2 cut(s) 44, 48
SinI GGWCC 1 cut(s) 865
SmiMI CAYNNNNRTG 2 cut(s) 366, 776
SmlI CTYRAG 2 cut(s) 86, 869
SmoI CTYRAG 2 cut(s) 86, 869
Sse9I AATT 7 cut(s) 9, 101, 135, 162, 404, 520, 632
SsiI CCGC 1 cut(s) 833
SspMI CTAG 1 cut(s) 51
StyD4I CCNGG 6 cut(s) 187, 223, 292, 343, 511, 622
TaaI ACNGT 1 cut(s) 65
TaiI ACGT 4 cut(s) 599, 610, 655, 843
TaqI TCGA 1 cut(s) 751
TaqII GACCGA 1 cut(s) 681
TasI AATT 7 cut(s) 9, 101, 135, 162, 404, 520, 632
TatI WGTACW 1 cut(s) 241
Tru1I TTAA 4 cut(s) 8, 306, 330, 819
Tru9I TTAA 4 cut(s) 8, 306, 330, 819
TseFI GTSAC 2 cut(s) 592, 736
TseI GCWGC 2 cut(s) 566, 887
Tsp45I GTSAC 2 cut(s) 592, 736
TspDTI ATGAA 2 cut(s) 350, 627
Van91I CCANNNNNTGG 1 cut(s) 656
VpaK11BI GGWCC 1 cut(s) 865
XapI RAATTY 3 cut(s) 101, 162, 632
XbaI TCTAGA 1 cut(s) 50
XceI RCATGY 1 cut(s) 858
XspI CTAG 1 cut(s) 51
ZraI GACGTC 1 cut(s) 841
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.