RchiOBHm_Chr4g0433821

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0030060
Physical Location & Seq
Reverse (-)
57796508 .. 57797062
555 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 555 bp
ATGGATTACAACCTTTACATGTTCTTGTCTACACTACTTGCCATCTTCACTACTACTACTCTTGCATTCCTTTTTTGTGCTTATAAATCAAAATGCCATGAAAAATTCATTAATCTTCCCCCAGGCAGTTTTGGCTGGCCAATTATCGGCGAAACCTTTGCCTTCCTACACAATGACCATGAAAAATTTGTAGGGAATAGAATGAAGAAATACTCCTCCAAAATCTTCAAAACCAAGATACTAGGTGAGCCAACCGTGGTGTTATGTGGCACTGCCGGTCACAAATTTGTGGCTTCCAACGAAGAAAAGCTCTTTGTAGCATGGAGACCTCACTCAATGCAAAAGCTCTTCCACTCTTCTTACCAAAAAGCTGCTTCCACCGTCATACCAAGACAAATCAAAAAGCACGTAGCTCGGGCACCGGGGTTTCTGAGAGCCGAAGCCCTGGTTAGCTACGTGGGAGGGATGGATTCCATGGTTCTCGACCACCTGAAAACACACTGGGATGGCAAACAGGTGGTCGAGGCTCATCGCCTCACCAGCTACTCGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

184

Amino Acids

20.96

Weight (kDa)

9.58

Isoelectric Point (pI)

24.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030060)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0393761 RchiOBHm_Chr4g0433821

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 84
AccB1I GGYRCC 1 cut(s) 418
AccI GTMKAC 1 cut(s) 29
AcoI YGGCCR 1 cut(s) 137
AcsI RAATTY 3 cut(s) 104, 185, 284
AfiI CCNNNNNNNGG 1 cut(s) 146
AflIII ACRYGT 1 cut(s) 18
AgsI TTSAA 1 cut(s) 229
AjnI CCWGG 2 cut(s) 121, 444
AluBI AGCT 6 cut(s) 310, 346, 371, 413, 453, 543
AluI AGCT 6 cut(s) 310, 346, 371, 413, 453, 543
Alw26I GTCTC 1 cut(s) 319
Ama87I CYCGRG 1 cut(s) 414
AoxI GGCC 1 cut(s) 137
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 3 cut(s) 104, 185, 284
ArsI GACNNNNNNTTYG 2 cut(s) 504, 536
AseI ATTAAT 1 cut(s) 111
AsuC2I CCSGG 1 cut(s) 423
AsuHPI GGTGA 2 cut(s) 257, 529
AvaI CYCGRG 1 cut(s) 414
BaeGI GKGCMC 1 cut(s) 421
BalI TGGCCA 1 cut(s) 139
BanI GGYRCC 1 cut(s) 418
BbvI GCAGC 1 cut(s) 358
BccI CCATC 3 cut(s) 50, 460, 500
BcgI CGANNNNNNTGC 4 cut(s) 140, 174, 395, 429
BciT130I CCWGG 2 cut(s) 123, 446
BcnI CCSGG 1 cut(s) 423
BcoDI GTCTC 1 cut(s) 319
BfaI CTAG 1 cut(s) 242
BisI GCNGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 373
Bme1390I CCNGG 3 cut(s) 123, 423, 446
BmeT110I CYCGRG 1 cut(s) 414
BmiI GGNNCC 1 cut(s) 420
BmrFI CCNGG 3 cut(s) 123, 423, 446
BmrI ACTGGG 1 cut(s) 511
BmuI ACTGGG 1 cut(s) 511
BpuMI CCSGG 1 cut(s) 423
BsaAI YACGTR 2 cut(s) 409, 457
BsaI GGTCTC 1 cut(s) 319
BsaJI CCNNGG 5 cut(s) 121, 255, 422, 444, 474
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse118I RCCGGY 1 cut(s) 275
Bse1I ACTGG 1 cut(s) 506
BseBI CCWGG 2 cut(s) 123, 446
BseDI CCNNGG 5 cut(s) 121, 255, 422, 444, 474
BseGI GGATG 2 cut(s) 471, 511
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMII CTCAG 1 cut(s) 422
BseNI ACTGG 1 cut(s) 506
BseRI GAGGAG 1 cut(s) 205
BseSI GKGCMC 1 cut(s) 421
BseXI GCAGC 1 cut(s) 358
BshFI GGCC 1 cut(s) 139
BshNI GGYRCC 1 cut(s) 418
BsiHKCI CYCGRG 1 cut(s) 414
BsiSI CCGG 2 cut(s) 276, 422
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 1 cut(s) 319
BsmI GAATGC 1 cut(s) 65
BsnI GGCC 1 cut(s) 139
Bso31I GGTCTC 1 cut(s) 319
BsoBI CYCGRG 1 cut(s) 414
Bsp1286I GDGCHC 1 cut(s) 421
Bsp19I CCATGG 1 cut(s) 474
BspANI GGCC 1 cut(s) 139
BspCNI CTCAG 1 cut(s) 423
BspLI GGNNCC 1 cut(s) 420
BspQI GCTCTTC 1 cut(s) 353
BspT107I GGYRCC 1 cut(s) 418
BspTNI GGTCTC 1 cut(s) 319
BsrFI RCCGGY 1 cut(s) 275
BsrI ACTGG 1 cut(s) 506
BssAI RCCGGY 1 cut(s) 275
BssECI CCNNGG 5 cut(s) 121, 255, 422, 444, 474
BssT1I CCWWGG 1 cut(s) 474
Bst2UI CCWGG 2 cut(s) 123, 446
Bst4CI ACNGT 2 cut(s) 256, 382
Bst6I CTCTTC 2 cut(s) 353, 361
BstBAI YACGTR 2 cut(s) 409, 457
BstC8I GCNNGC 1 cut(s) 137
BstDEI CTNAG 1 cut(s) 431
BstDSI CCRYGG 2 cut(s) 255, 474
BstF5I GGATG 2 cut(s) 471, 511
BstMAI GTCTC 1 cut(s) 319
BstMWI GCNNNNNNNGC 2 cut(s) 132, 540
BstNI CCWGG 2 cut(s) 123, 446
BstNSI RCATGY 1 cut(s) 22
BstSCI CCNGG 3 cut(s) 121, 421, 444
BstSLI GKGCMC 1 cut(s) 421
BstV1I GCAGC 1 cut(s) 358
BsuRI GGCC 1 cut(s) 139
BtgI CCRYGG 2 cut(s) 255, 474
BtgZI GCGATG 1 cut(s) 515
BtsCI GGATG 2 cut(s) 471, 511
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 2 cut(s) 270, 499
Cac8I GCNNGC 1 cut(s) 137
Cfr10I RCCGGY 1 cut(s) 275
CviAII CATG 5 cut(s) 19, 98, 179, 321, 475
DdeI CTNAG 1 cut(s) 431
EaeI YGGCCR 1 cut(s) 137
Eam1104I CTCTTC 2 cut(s) 353, 361
EarI CTCTTC 2 cut(s) 353, 361
Eco130I CCWWGG 1 cut(s) 474
Eco31I GGTCTC 1 cut(s) 319
Eco88I CYCGRG 1 cut(s) 414
EcoRII CCWGG 2 cut(s) 121, 444
EcoT14I CCWWGG 1 cut(s) 474
ErhI CCWWGG 1 cut(s) 474
FaeI CATG 5 cut(s) 22, 101, 182, 324, 478
FaiI YATR 8 cut(s) 20, 84, 99, 180, 265, 322, 386, 476
FatI CATG 5 cut(s) 18, 97, 178, 320, 474
FblI GTMKAC 1 cut(s) 29
Fnu4HI GCNGC 1 cut(s) 372
FokI GGATG 2 cut(s) 478, 518
Fsp4HI GCNGC 1 cut(s) 372
FspBI CTAG 1 cut(s) 242
GluI GCNGC 1 cut(s) 372
HaeIII GGCC 1 cut(s) 139
HapII CCGG 2 cut(s) 276, 422
Hin1II CATG 5 cut(s) 22, 101, 182, 324, 478
HinfI GANTC 1 cut(s) 470
HpaII CCGG 2 cut(s) 276, 422
HphI GGTGA 2 cut(s) 257, 529
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 1 cut(s) 432
Hpy188III TCNNGA 1 cut(s) 482
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 2 cut(s) 256, 382
HpyCH4IV ACGT 2 cut(s) 408, 456
HpyCH4V TGCA 2 cut(s) 65, 340
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 540
HpyF3I CTNAG 1 cut(s) 431
HpySE526I ACGT 2 cut(s) 408, 456
Hsp92II CATG 5 cut(s) 22, 101, 182, 324, 478
LguI GCTCTTC 1 cut(s) 353
Lsp1109I GCAGC 1 cut(s) 358
MaeI CTAG 1 cut(s) 242
MaeII ACGT 2 cut(s) 408, 456
MaeIII GTNAC 1 cut(s) 278
MboII GAAGA 7 cut(s) 37, 107, 217, 217, 314, 340, 348
MhlI GDGCHC 1 cut(s) 421
MlsI TGGCCA 1 cut(s) 139
MluCI AATT 4 cut(s) 104, 141, 185, 284
MluNI TGGCCA 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 5 cut(s) 226, 339, 455, 517, 545
Mox20I TGGCCA 1 cut(s) 139
MscI TGGCCA 1 cut(s) 139
MseI TTAA 1 cut(s) 111
MslI CAYNNNNRTG 1 cut(s) 504
Msp20I TGGCCA 1 cut(s) 139
MspI CCGG 2 cut(s) 276, 422
MspR9I CCNGG 3 cut(s) 123, 423, 446
Mva1269I GAATGC 1 cut(s) 65
MvaI CCWGG 2 cut(s) 123, 446
MwoI GCNNNNNNNGC 2 cut(s) 132, 540
NciI CCSGG 1 cut(s) 423
NcoI CCATGG 1 cut(s) 474
NlaIII CATG 5 cut(s) 22, 101, 182, 324, 478
NlaIV GGNNCC 1 cut(s) 420
NmuCI GTSAC 1 cut(s) 278
NspI RCATGY 1 cut(s) 22
PciI ACATGT 1 cut(s) 18
PciSI GCTCTTC 1 cut(s) 353
PctI GAATGC 1 cut(s) 65
PfeI GAWTC 1 cut(s) 470
PkrI GCNGC 1 cut(s) 373
Ppu21I YACGTR 2 cut(s) 409, 457
PscI ACATGT 1 cut(s) 18
PshBI ATTAAT 1 cut(s) 111
PsiI TTATAA 1 cut(s) 84
Psp6I CCWGG 2 cut(s) 121, 444
PspGI CCWGG 2 cut(s) 121, 444
PspN4I GGNNCC 1 cut(s) 420
RseI CAYNNNNRTG 1 cut(s) 504
SapI GCTCTTC 1 cut(s) 353
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 1 cut(s) 372
ScrFI CCNGG 3 cut(s) 123, 423, 446
SduI GDGCHC 1 cut(s) 421
SmiMI CAYNNNNRTG 1 cut(s) 504
Sse9I AATT 4 cut(s) 104, 141, 185, 284
SspMI CTAG 1 cut(s) 242
StyD4I CCNGG 3 cut(s) 121, 421, 444
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 2 cut(s) 256, 382
TaiI ACGT 2 cut(s) 411, 459
TaqI TCGA 2 cut(s) 483, 522
TasI AATT 4 cut(s) 104, 141, 185, 284
TfiI GAWTC 1 cut(s) 470
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 2 cut(s) 277, 506
TseFI GTSAC 1 cut(s) 278
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 4 cut(s) 97, 114, 195, 218
TspRI CASTG 2 cut(s) 277, 506
VspI ATTAAT 1 cut(s) 111
XapI RAATTY 3 cut(s) 104, 185, 284
XceI RCATGY 1 cut(s) 22
XmiI GTMKAC 1 cut(s) 29
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.