RchiOBHm_Chr4g0435451

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Forward (+)
59008535 .. 59010167
1633 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 297 bp
ATGGAGAGATTGGCGGAGGCGGCCACCACGGCGGCGCTGGGGTTCGTGAGGTGGGAGGAGGTGTTTGTGTCCTCCGATAAGGGGCGGAGAGAGGTTCATTACTATCTGAAGCGGAGCGACGGGTGCTCAGATCTGGCTGTGATAGGGAAAGAGAAGAGCTTGAGGCACATGTCCTATCACTATGCCTTTCGAAACCGGTCTTTGTTCCCGGCGTCTTCGCTGGTTAAGCTCAAGTCGCGTAGAGAGGTCGTCGATTGGCTCAAGTCTGTGGTTTCAGGATATTTAGTTAAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet BAH

Protein Analysis

98

Amino Acids

11.28

Weight (kDa)

9.81

Isoelectric Point (pI)

67.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 238
AciI CCGC 5 cut(s) 14, 20, 32, 85, 112
AcoI YGGCCR 1 cut(s) 21
AcuI CTGAAG 1 cut(s) 128
AcyI GRCGYC 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 81
AflIII ACRYGT 1 cut(s) 168
AgeI ACCGGT 1 cut(s) 195
AluBI AGCT 2 cut(s) 159, 229
AluI AGCT 2 cut(s) 159, 229
Alw21I GWGCWC 1 cut(s) 128
AoxI GGCC 1 cut(s) 21
AsiGI ACCGGT 1 cut(s) 195
AspLEI GCGC 1 cut(s) 37
AsuC2I CCSGG 1 cut(s) 209
AsuII TTCGAA 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 128
BceAI ACGGC 1 cut(s) 45
BcnI CCSGG 1 cut(s) 209
BfoI RGCGCY 1 cut(s) 38
BglI GCCNNNNNGGC 1 cut(s) 29
BglII AGATCT 1 cut(s) 130
BisI GCNGC 2 cut(s) 21, 33
BlsI GCNGC 2 cut(s) 22, 34
Bme1390I CCNGG 1 cut(s) 209
BmrFI CCNGG 1 cut(s) 209
BpiI GAAGAC 1 cut(s) 207
Bpu14I TTCGAA 1 cut(s) 190
BpuEI CTTGAG 3 cut(s) 181, 215, 245
BpuMI CCSGG 1 cut(s) 209
BsaHI GRCGYC 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 195
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 1 cut(s) 81
Bse118I RCCGGY 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 81
BseMII CTCAG 1 cut(s) 141
BseRI GAGGAG 1 cut(s) 71
BseYI CCCAGC 1 cut(s) 37
Bsh1236I CGCG 1 cut(s) 238
BshFI GGCC 1 cut(s) 23
BshTI ACCGGT 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 128
BsiSI CCGG 2 cut(s) 196, 209
BslI CCNNNNNNNGG 1 cut(s) 81
BsnI GGCC 1 cut(s) 23
Bsp119I TTCGAA 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 1 cut(s) 130
BspACI CCGC 5 cut(s) 14, 20, 32, 85, 112
BspANI GGCC 1 cut(s) 23
BspCNI CTCAG 1 cut(s) 140
BspFNI CGCG 1 cut(s) 238
BspQI GCTCTTC 1 cut(s) 149
BspT104I TTCGAA 1 cut(s) 190
BsrFI RCCGGY 1 cut(s) 195
BssAI RCCGGY 1 cut(s) 195
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 1 cut(s) 130
BssNI GRCGYC 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 149
BstACI GRCGYC 1 cut(s) 212
BstBI TTCGAA 1 cut(s) 190
BstDEI CTNAG 1 cut(s) 127
BstDSI CCRYGG 1 cut(s) 27
BstFNI CGCG 1 cut(s) 238
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 5 cut(s) 20, 29, 123, 226, 235
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 207
BstUI CGCG 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BsuRI GGCC 1 cut(s) 23
BtgI CCRYGG 1 cut(s) 27
CfoI GCGC 1 cut(s) 37
Cfr10I RCCGGY 1 cut(s) 195
CseI GACGC 1 cut(s) 201
CspAI ACCGGT 1 cut(s) 195
CviAII CATG 1 cut(s) 169
CviJI RGCY 5 cut(s) 23, 137, 159, 229, 259
CviKI_1 RGCY 5 cut(s) 23, 137, 159, 229, 259
DdeI CTNAG 1 cut(s) 127
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
EaeI YGGCCR 1 cut(s) 21
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
EciI GGCGGA 2 cut(s) 29, 100
Eco57I CTGAAG 1 cut(s) 128
FaeI CATG 1 cut(s) 172
FaiI YATR 2 cut(s) 170, 183
FatI CATG 1 cut(s) 168
Fnu4HI GCNGC 2 cut(s) 21, 33
Fsp4HI GCNGC 2 cut(s) 21, 33
GlaI GCGC 1 cut(s) 36
GluI GCNGC 2 cut(s) 21, 33
GsaI CCCAGC 1 cut(s) 41
HaeII RGCGCY 1 cut(s) 38
HaeIII GGCC 1 cut(s) 23
HapII CCGG 2 cut(s) 196, 209
HgaI GACGC 1 cut(s) 201
HhaI GCGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 212
Hin1II CATG 1 cut(s) 172
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HpaII CCGG 2 cut(s) 196, 209
Hpy188I TCNGA 3 cut(s) 76, 108, 130
Hpy188III TCNNGA 2 cut(s) 46, 276
Hpy99I CGWCG 2 cut(s) 122, 254
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 29, 123, 226, 235
HpyF3I CTNAG 1 cut(s) 127
Hsp92I GRCGYC 1 cut(s) 212
Hsp92II CATG 1 cut(s) 172
HspAI GCGC 1 cut(s) 35
Kzo9I GATC 1 cut(s) 130
LguI GCTCTTC 1 cut(s) 149
LmnI GCTCC 1 cut(s) 114
LpnPI CCDG 6 cut(s) 23, 119, 206, 209, 222, 261
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 2 cut(s) 166, 207
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 128
MnlI CCTC 8 cut(s) 10, 42, 49, 52, 82, 85, 156, 238
MseI TTAA 2 cut(s) 225, 288
MspI CCGG 2 cut(s) 196, 209
MspR9I CCNGG 1 cut(s) 209
MvnI CGCG 1 cut(s) 238
MwoI GCNNNNNNNGC 5 cut(s) 20, 29, 123, 226, 235
NciI CCSGG 1 cut(s) 209
NdeII GATC 1 cut(s) 130
NlaIII CATG 1 cut(s) 172
NspI RCATGY 1 cut(s) 172
NspV TTCGAA 1 cut(s) 190
PciI ACATGT 1 cut(s) 168
PciSI GCTCTTC 1 cut(s) 149
PinAI ACCGGT 1 cut(s) 195
PkrI GCNGC 2 cut(s) 22, 34
PscI ACATGT 1 cut(s) 168
PspFI CCCAGC 1 cut(s) 37
PsuI RGATCY 1 cut(s) 130
SapI GCTCTTC 1 cut(s) 149
SaqAI TTAA 2 cut(s) 225, 288
SatI GCNGC 2 cut(s) 21, 33
Sau3AI GATC 1 cut(s) 130
ScrFI CCNGG 1 cut(s) 209
SduI GDGCHC 1 cut(s) 128
SetI ASST 6 cut(s) 53, 63, 96, 161, 231, 249
SfuI TTCGAA 1 cut(s) 190
SmlI CTYRAG 3 cut(s) 160, 230, 260
SmoI CTYRAG 3 cut(s) 160, 230, 260
SsiI CCGC 5 cut(s) 14, 20, 32, 85, 112
StyD4I CCNGG 1 cut(s) 207
TaqI TCGA 2 cut(s) 190, 252
TauI GCSGC 2 cut(s) 23, 35
Tru1I TTAA 2 cut(s) 225, 288
Tru9I TTAA 2 cut(s) 225, 288
TspDTI ATGAA 1 cut(s) 86
XceI RCATGY 1 cut(s) 172
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.