RchiOBHm_Chr4g0436591

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Reverse (-)
59863553 .. 59864467
915 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 465 bp
ATGAGATTGATTACATGGCCAGGTCTGTATTGGTACATTGCAGAGGGAGGGCTTACTGTTGAAAGCAAGCGATGGGTGCCTCGAAGAGGGAAAACTCCACAGAAATATGTAGATGTAGCTGATGCATGCACAAGTTGGAAGAACCCTAGCCTTTTCCCCAAGAACTATATTAATGAGGTTGAACCAAAAGCATTAGATCGATCCCTCAGATGTTTATCAGCATATGGAGATTATGTATCGCAACGTTTGCGTGAGATGGGTGACTTTACTGCCAAGTCAGTTGCTTCAGATGGTATTCCTCCTCGCTTCTTGAGGGAGAAAGGGTGGAGGGTGTACATGAGAACACCCTATAATTATGAATTAGGTGAAGCCCTCAAGGGCTTCACTCTTCACTGCGGTTGCGCCTTCCACGGTTCGATGGTGATGGATCTCTATCTAATTTTATTTTTTATTATTTATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

154

Amino Acids

17.91

Weight (kDa)

9.17

Isoelectric Point (pI)

34.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 76
AciI CCGC 1 cut(s) 396
AclI AACGTT 1 cut(s) 244
AclWI GGATC 2 cut(s) 195, 435
AcoI YGGCCR 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 270
AfaI GTAC 2 cut(s) 35, 335
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 2 cut(s) 62, 182
AjnI CCWGG 1 cut(s) 19
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
AlwI GGATC 2 cut(s) 195, 435
AoxI GGCC 1 cut(s) 17
AseI ATTAAT 1 cut(s) 171
AspLEI GCGC 1 cut(s) 404
AsuHPI GGTGA 3 cut(s) 272, 377, 433
BalI TGGCCA 1 cut(s) 19
BanI GGYRCC 1 cut(s) 76
BccI CCATC 5 cut(s) 66, 250, 284, 412, 418
BciT130I CCWGG 1 cut(s) 21
BfaI CTAG 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 21
BmsI GCATC 1 cut(s) 112
BpuEI CTTGAG 2 cut(s) 331, 359
Bsa29I ATCGAT 1 cut(s) 199
BsaBI GATNNNNATC 2 cut(s) 214, 432
BsaJI CCNNGG 1 cut(s) 409
BsaXI ACNNNNNCTCC 4 cut(s) 219, 249, 308, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 36
Bse8I GATNNNNATC 2 cut(s) 214, 432
BseBI CCWGG 1 cut(s) 21
BseCI ATCGAT 1 cut(s) 199
BseDI CCNNGG 1 cut(s) 409
BseJI GATNNNNATC 2 cut(s) 214, 432
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 220
BseRI GAGGAG 1 cut(s) 291
BshFI GGCC 1 cut(s) 19
BshNI GGYRCC 1 cut(s) 76
BshVI ATCGAT 1 cut(s) 199
BslI CCNNNNNNNGG 1 cut(s) 86
BsnI GGCC 1 cut(s) 19
Bsp1407I TGTACA 1 cut(s) 333
Bsp143I GATC 3 cut(s) 196, 200, 427
BspACI CCGC 1 cut(s) 396
BspANI GGCC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 219
BspDI ATCGAT 1 cut(s) 199
BspLI GGNNCC 1 cut(s) 78
BspPI GGATC 2 cut(s) 195, 435
BspT107I GGYRCC 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 36
BsrGI TGTACA 1 cut(s) 333
BssECI CCNNGG 1 cut(s) 409
BssMI GATC 3 cut(s) 196, 200, 427
Bst2UI CCWGG 1 cut(s) 21
Bst4CI ACNGT 2 cut(s) 58, 413
Bst6I CTCTTC 2 cut(s) 79, 393
BstAPI GCANNNNNTGC 1 cut(s) 247
BstAUI TGTACA 1 cut(s) 333
BstC8I GCNNGC 2 cut(s) 68, 127
BstDEI CTNAG 1 cut(s) 206
BstDSI CCRYGG 1 cut(s) 409
BstENI CCTNNNNNAGG 1 cut(s) 84
BstHHI GCGC 1 cut(s) 404
BstKTI GATC 3 cut(s) 199, 203, 430
BstMBI GATC 3 cut(s) 196, 200, 427
BstMWI GCNNNNNNNGC 2 cut(s) 76, 247
BstNI CCWGG 1 cut(s) 21
BstNSI RCATGY 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 19
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
Bsu15I ATCGAT 1 cut(s) 199
BsuRI GGCC 1 cut(s) 19
BsuTUI ATCGAT 1 cut(s) 199
BtgI CCRYGG 1 cut(s) 409
BtgZI GCGATG 1 cut(s) 85
BtsI GCAGTG 1 cut(s) 391
BtsIMutI CAGTG 1 cut(s) 391
Cac8I GCNNGC 2 cut(s) 68, 127
CfoI GCGC 1 cut(s) 404
ClaI ATCGAT 1 cut(s) 199
Csp6I GTAC 2 cut(s) 34, 334
CviAII CATG 3 cut(s) 15, 126, 337
CviJI RGCY 6 cut(s) 19, 52, 119, 150, 371, 381
CviKI_1 RGCY 6 cut(s) 19, 52, 119, 150, 371, 381
CviQI GTAC 2 cut(s) 34, 334
DdeI CTNAG 1 cut(s) 206
DpnI GATC 3 cut(s) 198, 202, 429
DpnII GATC 3 cut(s) 196, 200, 427
EaeI YGGCCR 1 cut(s) 17
Eam1104I CTCTTC 2 cut(s) 79, 393
EarI CTCTTC 2 cut(s) 79, 393
Eco57I CTGAAG 1 cut(s) 270
EcoNI CCTNNNNNAGG 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 19
EcoT22I ATGCAT 1 cut(s) 127
FaeI CATG 3 cut(s) 18, 129, 340
FatI CATG 3 cut(s) 14, 125, 336
FauNDI CATATG 1 cut(s) 223
FspBI CTAG 1 cut(s) 147
GlaI GCGC 1 cut(s) 403
HaeIII GGCC 1 cut(s) 19
HhaI GCGC 1 cut(s) 404
Hin1II CATG 3 cut(s) 18, 129, 340
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
HphI GGTGA 3 cut(s) 272, 377, 433
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 2 cut(s) 209, 289
Hpy188III TCNNGA 1 cut(s) 310
Hpy8I GTNNAC 1 cut(s) 334
HpyAV CCTTC 1 cut(s) 415
HpyCH4III ACNGT 2 cut(s) 58, 413
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 3 cut(s) 41, 125, 129
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 247
HpyF3I CTNAG 1 cut(s) 206
HpySE526I ACGT 1 cut(s) 244
Hsp92II CATG 3 cut(s) 18, 129, 340
HspAI GCGC 1 cut(s) 402
Kzo9I GATC 3 cut(s) 196, 200, 427
LpnPI CCDG 2 cut(s) 6, 33
LweI GCATC 1 cut(s) 112
MaeI CTAG 1 cut(s) 147
MaeII ACGT 1 cut(s) 244
MaeIII GTNAC 1 cut(s) 260
MalI GATC 3 cut(s) 198, 202, 429
MboI GATC 3 cut(s) 196, 200, 427
MboII GAAGA 3 cut(s) 96, 151, 380
MflI RGATCY 1 cut(s) 427
MlsI TGGCCA 1 cut(s) 19
MluCI AATT 3 cut(s) 352, 359, 438
MluNI TGGCCA 1 cut(s) 19
MmeI TCCRAC 1 cut(s) 116
Mox20I TGGCCA 1 cut(s) 19
Mph1103I ATGCAT 1 cut(s) 127
MscI TGGCCA 1 cut(s) 19
MseI TTAA 1 cut(s) 171
Msp20I TGGCCA 1 cut(s) 19
MspR9I CCNGG 1 cut(s) 21
MvaI CCWGG 1 cut(s) 21
MwoI GCNNNNNNNGC 2 cut(s) 76, 247
NdeI CATATG 1 cut(s) 223
NdeII GATC 3 cut(s) 196, 200, 427
NlaIII CATG 3 cut(s) 18, 129, 340
NlaIV GGNNCC 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 260
NsiI ATGCAT 1 cut(s) 127
NspI RCATGY 1 cut(s) 129
PaeI GCATGC 1 cut(s) 129
PshBI ATTAAT 1 cut(s) 171
Psp1406I AACGTT 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 78
PsuI RGATCY 1 cut(s) 427
RsaI GTAC 2 cut(s) 35, 335
RsaNI GTAC 2 cut(s) 34, 334
SaqAI TTAA 1 cut(s) 171
Sau3AI GATC 3 cut(s) 196, 200, 427
ScrFI CCNGG 1 cut(s) 21
SetI ASST 5 cut(s) 25, 121, 180, 247, 367
SfaNI GCATC 1 cut(s) 112
SmlI CTYRAG 2 cut(s) 310, 374
SmoI CTYRAG 2 cut(s) 310, 374
SphI GCATGC 1 cut(s) 129
Sse9I AATT 3 cut(s) 352, 359, 438
SsiI CCGC 1 cut(s) 396
SspMI CTAG 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 19
TaaI ACNGT 2 cut(s) 58, 413
TaiI ACGT 1 cut(s) 247
TaqI TCGA 3 cut(s) 82, 199, 416
TasI AATT 3 cut(s) 352, 359, 438
TatI WGTACW 1 cut(s) 333
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 1 cut(s) 398
TseFI GTSAC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 1 cut(s) 372
TspRI CASTG 1 cut(s) 398
VspI ATTAAT 1 cut(s) 171
XagI CCTNNNNNAGG 1 cut(s) 84
XceI RCATGY 1 cut(s) 129
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
XspI CTAG 1 cut(s) 147
Zsp2I ATGCAT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.