RchiOBHm_Chr4g0440381

SNF1-related protein kinase regulatory subunit gamma-1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Reverse (-)
62513464 .. 62514444
981 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 669 bp
ATGACAGAAGCAGCACAAGAAGGAAGGGGAATTCCCAAGAGTCCTAAGAGGTCAAGCTGCTATGATGCCTACTTCGAAAGGATTCAGTTCAGGAAGAAATTACCGCATGAGCTTCAAGAGAAATTAACGTATGCATTTTCAAAAGTTCCAGTTTCATCTTTCCAATCCCTTCAGGGAGGAAAAGTAATTGAGATTGTAGCAGATATGTCTATTCCTGATGCAGTCAAGACTCTCTCAGAGCACAAGATTTTGTCAGCTCCGGTGATTACTGTGCCGGATCAAACCTATTCGGATTGGAGAGGAAGGTACCTTGGAATCATAGATTACTCTGCCGTTCTTGTTTGGGTGTTGGAGAGTGCAGAACATGCTGCTGAAGGTGCCTCGTCAGCTAGTTATGCAGCAACCACGGCTGGTGGAATTGGTGGTGCAGGAGCTGTCGGCGCCATTGGAGCTGTAGCATTGGGGGTCACAGGTCCTGCTGCAATTGCAGGCCTAACTGCTGCTGCAGTTTGTTCCGCTGTAGCCGGGAGTGCTGTTGGAAAAATAGGTGAAATGTTACTGCACATTAGTCACAAATTTAAAACGAAGAATAGTGCCACGAACAAGAATAATAAATGCATGATAGTCATCCAGTATACAGAGAACAAGAAGGGATTTTGTAGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBS

Protein Analysis

222

Amino Acids

23.41

Weight (kDa)

9.2

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 306
AccB1I GGYRCC 3 cut(s) 306, 377, 440
AccI GTMKAC 1 cut(s) 635
AciI CCGC 2 cut(s) 104, 516
AclWI GGATC 1 cut(s) 285
AcsI RAATTY 2 cut(s) 30, 575
AcuI CTGAAG 2 cut(s) 155, 393
AcyI GRCGYC 1 cut(s) 441
AfaI GTAC 1 cut(s) 308
AgsI TTSAA 2 cut(s) 116, 141
AluBI AGCT 6 cut(s) 57, 112, 257, 389, 434, 452
AluI AGCT 6 cut(s) 57, 112, 257, 389, 434, 452
Alw21I GWGCWC 1 cut(s) 243
AlwI GGATC 1 cut(s) 285
AlwNI CAGNNNCTG 2 cut(s) 434, 476
AoxI GGCC 1 cut(s) 490
ApeKI GCWGC 7 cut(s) 11, 57, 368, 398, 479, 500, 503
ApoI RAATTY 2 cut(s) 30, 575
Asp700I GAANNNNTTC 1 cut(s) 81
Asp718I GGTACC 1 cut(s) 306
AspLEI GCGC 1 cut(s) 443
AspS9I GGNCC 1 cut(s) 473
AsuC2I CCSGG 1 cut(s) 526
AsuHPI GGTGA 2 cut(s) 274, 560
AsuII TTCGAA 1 cut(s) 75
AvaII GGWCC 1 cut(s) 473
BanI GGYRCC 3 cut(s) 306, 377, 440
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 7 cut(s) 23, 44, 355, 410, 466, 487, 490
BceAI ACGGC 2 cut(s) 317, 423
BcnI CCSGG 1 cut(s) 526
BfaI CTAG 1 cut(s) 390
BfmI CTRYAG 3 cut(s) 453, 504, 519
BfoI RGCGCY 1 cut(s) 444
BisI GCNGC 7 cut(s) 12, 58, 369, 399, 480, 501, 504
BlsI GCNGC 7 cut(s) 13, 59, 370, 400, 481, 502, 505
Bme1390I CCNGG 1 cut(s) 526
Bme18I GGWCC 1 cut(s) 473
BmgT120I GGNCC 1 cut(s) 473
BmiI GGNNCC 3 cut(s) 308, 379, 442
BmrFI CCNGG 1 cut(s) 526
BmsI GCATC 2 cut(s) 55, 208
Bpu14I TTCGAA 1 cut(s) 75
BpuMI CCSGG 1 cut(s) 526
BsaBI GATNNNNATC 1 cut(s) 626
BsaHI GRCGYC 1 cut(s) 441
BsaJI CCNNGG 2 cut(s) 310, 405
BsaWI WCCGGW 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bse1I ACTGG 2 cut(s) 149, 631
Bse8I GATNNNNATC 1 cut(s) 626
BseDI CCNNGG 2 cut(s) 310, 405
BseGI GGATG 1 cut(s) 627
BseJI GATNNNNATC 1 cut(s) 626
BseMII CTCAG 1 cut(s) 249
BseNI ACTGG 2 cut(s) 149, 631
BseXI GCAGC 7 cut(s) 23, 44, 355, 410, 466, 487, 490
BsgI GTGCAG 3 cut(s) 378, 447, 545
BshFI GGCC 1 cut(s) 492
BshNI GGYRCC 3 cut(s) 306, 377, 440
BsiHKAI GWGCWC 1 cut(s) 243
BsiSI CCGG 3 cut(s) 260, 275, 525
BsnI GGCC 1 cut(s) 492
Bsp119I TTCGAA 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 243
Bsp143I GATC 1 cut(s) 277
BspACI CCGC 2 cut(s) 104, 516
BspANI GGCC 1 cut(s) 492
BspCNI CTCAG 1 cut(s) 248
BspLI GGNNCC 3 cut(s) 308, 379, 442
BspMAI CTGCAG 1 cut(s) 508
BspPI GGATC 1 cut(s) 285
BspT104I TTCGAA 1 cut(s) 75
BspT107I GGYRCC 3 cut(s) 306, 377, 440
BsrI ACTGG 2 cut(s) 149, 631
BssECI CCNNGG 2 cut(s) 310, 405
BssMI GATC 1 cut(s) 277
BssNAI GTATAC 1 cut(s) 636
BssNI GRCGYC 1 cut(s) 441
BssT1I CCWWGG 1 cut(s) 310
Bst1107I GTATAC 1 cut(s) 636
Bst4CI ACNGT 1 cut(s) 271
BstACI GRCGYC 1 cut(s) 441
BstAPI GCANNNNNTGC 1 cut(s) 365
BstBI TTCGAA 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 490
BstDEI CTNAG 2 cut(s) 45, 235
BstDSI CCRYGG 1 cut(s) 405
BstF5I GGATG 1 cut(s) 627
BstH2I RGCGCY 1 cut(s) 444
BstHHI GCGC 1 cut(s) 443
BstKTI GATC 1 cut(s) 280
BstMBI GATC 1 cut(s) 277
BstMWI GCNNNNNNNGC 9 cut(s) 365, 377, 386, 395, 407, 440, 449, 485, 530
BstNSI RCATGY 1 cut(s) 368
BstSCI CCNGG 1 cut(s) 524
BstSFI CTRYAG 3 cut(s) 453, 504, 519
BstV1I GCAGC 7 cut(s) 23, 44, 355, 410, 466, 487, 490
BstZ17I GTATAC 1 cut(s) 636
BsuRI GGCC 1 cut(s) 492
BtgI CCRYGG 1 cut(s) 405
BtsCI GGATG 1 cut(s) 627
Cac8I GCNNGC 1 cut(s) 490
CaiI CAGNNNCTG 2 cut(s) 434, 476
CfoI GCGC 1 cut(s) 443
Cfr13I GGNCC 1 cut(s) 473
Csp6I GTAC 1 cut(s) 307
CviAII CATG 3 cut(s) 107, 365, 619
CviJI RGCY 9 cut(s) 57, 112, 257, 389, 410, 434, 452, 492, 524
CviKI_1 RGCY 9 cut(s) 57, 112, 257, 389, 410, 434, 452, 492, 524
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 2 cut(s) 45, 235
DinI GGCGCC 1 cut(s) 442
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
DraI TTTAAA 1 cut(s) 580
Eco130I CCWWGG 1 cut(s) 310
Eco147I AGGCCT 1 cut(s) 492
Eco47I GGWCC 1 cut(s) 473
Eco57I CTGAAG 2 cut(s) 155, 393
EcoO109I RGGNCCY 1 cut(s) 473
EcoRI GAATTC 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 310
EcoT22I ATGCAT 2 cut(s) 136, 620
EgeI GGCGCC 1 cut(s) 442
EheI GGCGCC 1 cut(s) 442
ErhI CCWWGG 1 cut(s) 310
FaeI CATG 3 cut(s) 110, 368, 622
FaiI YATR 9 cut(s) 63, 108, 132, 206, 320, 366, 396, 620, 636
FatI CATG 3 cut(s) 106, 364, 618
FblI GTMKAC 1 cut(s) 635
Fnu4HI GCNGC 7 cut(s) 12, 58, 369, 399, 480, 501, 504
FokI GGATG 1 cut(s) 614
Fsp4HI GCNGC 7 cut(s) 12, 58, 369, 399, 480, 501, 504
FspBI CTAG 1 cut(s) 390
GlaI GCGC 1 cut(s) 442
GluI GCNGC 7 cut(s) 12, 58, 369, 399, 480, 501, 504
HaeII RGCGCY 1 cut(s) 444
HaeIII GGCC 1 cut(s) 492
HapII CCGG 3 cut(s) 260, 275, 525
HhaI GCGC 1 cut(s) 443
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 3 cut(s) 110, 368, 622
Hin6I GCGC 1 cut(s) 441
HinP1I GCGC 1 cut(s) 441
HinfI GANTC 4 cut(s) 40, 82, 229, 315
HpaII CCGG 3 cut(s) 260, 275, 525
HphI GGTGA 2 cut(s) 274, 560
Hpy166II GTNNAC 1 cut(s) 636
Hpy188I TCNGA 2 cut(s) 238, 292
Hpy188III TCNNGA 4 cut(s) 91, 116, 215, 226
Hpy8I GTNNAC 1 cut(s) 636
HpyAV CCTTC 6 cut(s) 14, 18, 179, 297, 368, 643
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 1 cut(s) 128
HpyF10VI GCNNNNNNNGC 9 cut(s) 365, 377, 386, 395, 407, 440, 449, 485, 530
HpyF3I CTNAG 2 cut(s) 45, 235
HpySE526I ACGT 1 cut(s) 128
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 3 cut(s) 110, 368, 622
HspAI GCGC 1 cut(s) 441
KasI GGCGCC 1 cut(s) 440
KpnI GGTACC 1 cut(s) 310
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 3 cut(s) 262, 431, 449
Lsp1109I GCAGC 7 cut(s) 23, 44, 355, 410, 466, 487, 490
LweI GCATC 2 cut(s) 55, 208
MaeI CTAG 1 cut(s) 390
MaeII ACGT 1 cut(s) 128
MaeIII GTNAC 3 cut(s) 466, 555, 569
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 2 cut(s) 106, 598
MfeI CAATTG 1 cut(s) 483
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 7 cut(s) 30, 98, 122, 186, 417, 483, 575
Mly113I GGCGCC 1 cut(s) 441
MlyI GAGTC 2 cut(s) 49, 223
MmeI TCCRAC 2 cut(s) 330, 517
MnlI CCTC 4 cut(s) 42, 170, 293, 391
Mph1103I ATGCAT 2 cut(s) 136, 620
MroXI GAANNNNTTC 1 cut(s) 81
MseI TTAA 2 cut(s) 125, 579
MspA1I CMGCKG 1 cut(s) 518
MspI CCGG 3 cut(s) 260, 275, 525
MspR9I CCNGG 1 cut(s) 526
MunI CAATTG 1 cut(s) 483
MwoI GCNNNNNNNGC 9 cut(s) 365, 377, 386, 395, 407, 440, 449, 485, 530
NarI GGCGCC 1 cut(s) 441
NciI CCSGG 1 cut(s) 526
NdeII GATC 1 cut(s) 277
NlaIII CATG 3 cut(s) 110, 368, 622
NlaIV GGNNCC 3 cut(s) 308, 379, 442
NmuCI GTSAC 2 cut(s) 466, 569
NsiI ATGCAT 2 cut(s) 136, 620
NspI RCATGY 1 cut(s) 368
NspV TTCGAA 1 cut(s) 75
PceI AGGCCT 1 cut(s) 492
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 2 cut(s) 82, 315
PkrI GCNGC 7 cut(s) 13, 59, 370, 400, 481, 502, 505
PleI GAGTC 2 cut(s) 48, 223
PluTI GGCGCC 1 cut(s) 444
PpsI GAGTC 2 cut(s) 48, 223
PpuMI RGGWCCY 1 cut(s) 473
Psp5II RGGWCCY 1 cut(s) 473
PspN4I GGNNCC 3 cut(s) 308, 379, 442
PspPI GGNCC 1 cut(s) 473
PspPPI RGGWCCY 1 cut(s) 473
PstI CTGCAG 1 cut(s) 508
PstNI CAGNNNCTG 2 cut(s) 434, 476
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SaqAI TTAA 2 cut(s) 125, 579
SatI GCNGC 7 cut(s) 12, 58, 369, 399, 480, 501, 504
Sau3AI GATC 1 cut(s) 277
Sau96I GGNCC 1 cut(s) 473
SchI GAGTC 2 cut(s) 49, 223
ScrFI CCNGG 1 cut(s) 526
SduI GDGCHC 1 cut(s) 243
SfaNI GCATC 2 cut(s) 55, 208
SfcI CTRYAG 3 cut(s) 453, 504, 519
SfoI GGCGCC 1 cut(s) 442
SfuI TTCGAA 1 cut(s) 75
SinI GGWCC 1 cut(s) 473
Sse9I AATT 7 cut(s) 30, 98, 122, 186, 417, 483, 575
SseBI AGGCCT 1 cut(s) 492
SsiI CCGC 2 cut(s) 104, 516
SspDI GGCGCC 1 cut(s) 440
SspMI CTAG 1 cut(s) 390
StuI AGGCCT 1 cut(s) 492
StyD4I CCNGG 1 cut(s) 524
StyI CCWWGG 1 cut(s) 310
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 1 cut(s) 131
TaqI TCGA 1 cut(s) 75
TasI AATT 7 cut(s) 30, 98, 122, 186, 417, 483, 575
TfiI GAWTC 2 cut(s) 82, 315
Tru1I TTAA 2 cut(s) 125, 579
Tru9I TTAA 2 cut(s) 125, 579
TseFI GTSAC 2 cut(s) 466, 569
TseI GCWGC 7 cut(s) 11, 57, 368, 398, 479, 500, 503
Tsp45I GTSAC 2 cut(s) 466, 569
TspDTI ATGAA 1 cut(s) 144
VpaK11BI GGWCC 1 cut(s) 473
XapI RAATTY 2 cut(s) 30, 575
XceI RCATGY 1 cut(s) 368
XmiI GTMKAC 1 cut(s) 635
XmnI GAANNNNTTC 1 cut(s) 81
XspI CTAG 1 cut(s) 390
Zsp2I ATGCAT 2 cut(s) 136, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.