Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

62755433 .. 62756243

Gene Structure 811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGCGGAATTGGGTTGCTTGGAGCAATGTCATGGAGTTGTTTAGCAGCACTGCCGAGCCTGACTTGGTGTGTCAAACTGCTATTGTGAGCGCTTGTGCTAAATGTGGGGATGTAGATTATGCACGGCAATTGTTCGATGAAATGCCTGAGAGAGACCCCATTGCTTGGAATGCGATGATTGCGGGGTACGCGCAATGTGGGAAGTCCAGGGAAGCTTTGGGTTTGTTCCATTTGATGCAAATGGAGGGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

84

Amino Acids

9.41

Weight (kDa)

4.53

Isoelectric Point (pI)

29.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	52 - 83	4.4e-06	PPR repeat family
PPR	PF01535	55 - 83	6.3e-09	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	165
AccII	CGCG	1 cut(s)	191
AciI	CCGC	2 cut(s)	4, 182
AfaI	GTAC	1 cut(s)	188
AfeI	AGCGCT	1 cut(s)	91
AfiI	CCNNNNNNNGG	1 cut(s)	165
AjnI	CCWGG	1 cut(s)	206
AluBI	AGCT	1 cut(s)	215
AluI	AGCT	1 cut(s)	215
Alw26I	GTCTC	1 cut(s)	147
Aor51HI	AGCGCT	1 cut(s)	91
ApeKI	GCWGC	1 cut(s)	45
AspLEI	GCGC	2 cut(s)	92, 193
BbvI	GCAGC	1 cut(s)	57
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	147
BfoI	RGCGCY	1 cut(s)	93
BisI	GCNGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	47
Bme1390I	CCNGG	1 cut(s)	208
BmrFI	CCNGG	1 cut(s)	208
BmsI	GCATC	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse3DI	GCAATG	3 cut(s)	31, 159, 200
BseBI	CCWGG	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMI	GCAATG	3 cut(s)	31, 159, 200
BseMII	CTCAG	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	57
Bsh1236I	CGCG	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	1 cut(s)	147
BsmI	GAATGC	1 cut(s)	175
Bso31I	GGTCTC	1 cut(s)	147
BspACI	CCGC	2 cut(s)	4, 182
BspCNI	CTCAG	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	147
BsrDI	GCAATG	3 cut(s)	31, 159, 200
BssECI	CCNNGG	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	115
BstFNI	CGCG	1 cut(s)	191
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	2 cut(s)	92, 193
BstMAI	GTCTC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 179, 188
BstNI	CCWGG	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	206
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	57
BtgZI	GCGATG	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	115
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	48
CfoI	GCGC	2 cut(s)	92, 193
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	2 cut(s)	58, 215
CviKI_1	RGCY	2 cut(s)	58, 215
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	1 cut(s)	147
Eco31I	GGTCTC	1 cut(s)	147
Eco47III	AGCGCT	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	206
FaeI	CATG	1 cut(s)	34
FaiI	YATR	2 cut(s)	32, 120
FatI	CATG	1 cut(s)	30
FauI	CCCGC	1 cut(s)	175
Fnu4HI	GCNGC	1 cut(s)	46
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	46
GlaI	GCGC	2 cut(s)	91, 192
GluI	GCNGC	1 cut(s)	46
HaeII	RGCGCY	1 cut(s)	93
HhaI	GCGC	2 cut(s)	92, 193
Hin1II	CATG	1 cut(s)	34
Hin6I	GCGC	2 cut(s)	90, 191
HinP1I	GCGC	2 cut(s)	90, 191
HindIII	AAGCTT	1 cut(s)	213
HpyCH4V	TGCA	2 cut(s)	122, 238
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 179, 188
HpyF3I	CTNAG	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	34
HspAI	GCGC	2 cut(s)	90, 191
LmnI	GCTCC	1 cut(s)	21
LpnPI	CCDG	4 cut(s)	72, 159, 193, 220
Lsp1109I	GCAGC	1 cut(s)	57
LweI	GCATC	1 cut(s)	225
MfeI	CAATTG	1 cut(s)	128
MluCI	AATT	2 cut(s)	7, 128
MnlI	CCTC	1 cut(s)	238
MspR9I	CCNGG	1 cut(s)	208
MunI	CAATTG	1 cut(s)	128
Mva1269I	GAATGC	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	208
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	3 cut(s)	170, 179, 188
NlaIII	CATG	1 cut(s)	34
NmeAIII	GCCGAG	1 cut(s)	79
PctI	GAATGC	1 cut(s)	175
PflMI	CCANNNNNTGG	1 cut(s)	165
PkrI	GCNGC	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SatI	GCNGC	1 cut(s)	46
ScrFI	CCNGG	1 cut(s)	208
SetI	ASST	1 cut(s)	217
SfaNI	GCATC	1 cut(s)	225
Sse9I	AATT	2 cut(s)	7, 128
SsiI	CCGC	2 cut(s)	4, 182
StyD4I	CCNGG	1 cut(s)	206
TaqI	TCGA	1 cut(s)	135
TasI	AATT	2 cut(s)	7, 128
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	1 cut(s)	45
TspDTI	ATGAA	1 cut(s)	153
TspRI	CASTG	1 cut(s)	55
Van91I	CCANNNNNTGG	1 cut(s)	165
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.