Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024972

Physical Location & Seq

Genomic Coordinates Reverse (-)

64014958 .. 64015563

Gene Structure 606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGGCAAGGACAATGTGCCATTCTACACAGTCATGTTTCCCTCCGCGCTTCTTGGAACTGGAGAGAATTGGACATTGATGAAGAATATTAGCGTGACTGAGTACTTGAACTATGAAAAAGGCAAGTTTTCCAAGAGTAGAGGCATTGGAGTTTTTGGAAATGATGTAAAAGGAACGGGTATTCCGGTTGAAGTTTGGCGCTATTACCTGCTGACTAATAGGCCTGAGGTATCGGACACATTGTTTACTTGGGCCGATTTACAAGCAAAACTCAAAAGTGAGTTGGTGGGCAATTTGGGCAACTTCATCAACCGAGTTTTGAGTTTTGTTGCCAAACCTTCAGGCAAAGGAGGATATGGTGACACCATCCCTGATGCTCCTCATGCAGACTCTGATGCTTTGACACTTCAATTAGCAGAAAAGGTCAGCAGGTACGTCGAGCAGTACATAGAAGCAATGGAGAAGCTCAAACTAAAGATAGCGCTGAAAATAGCAATGAGCATCTCTACCGAGGGGAATGCATATCTCCAAGAAACCAAGTTCTGGAAGCTTTACAAGGATCGAAGGACCGACCTTGGTGCTCCATTGTCACCAAAACTTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

201

Amino Acids

22.5

Weight (kDa)

9.06

Isoelectric Point (pI)

23.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1g	PF09334	1 - 107	1.7e-31	tRNA synthetases class I (M)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024972)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0442451
rosa_samantha	Rh4AG392900 Rh4DG399700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	216, 420
AccB7I	CCANNNNNTGG	1 cut(s)	543
AccII	CGCG	1 cut(s)	47
AciI	CCGC	1 cut(s)	45
AclWI	GGATC	1 cut(s)	567
AcuI	CTGAAG	2 cut(s)	324, 584
AfaI	GTAC	3 cut(s)	104, 434, 446
AfeI	AGCGCT	1 cut(s)	483
AfiI	CCNNNNNNNGG	1 cut(s)	543
AgsI	TTSAA	3 cut(s)	109, 191, 410
AloI	GAACNNNNNNTCC	2 cut(s)	166, 198
AluBI	AGCT	2 cut(s)	466, 550
AluI	AGCT	2 cut(s)	466, 550
Alw21I	GWGCWC	1 cut(s)	583
AlwI	GGATC	1 cut(s)	567
AlwNI	CAGNNNCTG	1 cut(s)	392
Aor51HI	AGCGCT	1 cut(s)	483
AoxI	GGCC	2 cut(s)	221, 252
AspLEI	GCGC	3 cut(s)	49, 201, 484
AspS9I	GGNCC	2 cut(s)	252, 567
AsuHPI	GGTGA	2 cut(s)	371, 582
AvaII	GGWCC	1 cut(s)	567
AxyI	CCTNAGG	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	583
BccI	CCATC	1 cut(s)	374
BcgI	CGANNNNNNTGC	6 cut(s)	418, 452, 500, 534, 560, 594
BfoI	RGCGCY	2 cut(s)	202, 485
BfuAI	ACCTGC	2 cut(s)	216, 420
BmcAI	AGTACT	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	567
BmgT120I	GGNCC	2 cut(s)	252, 567
BmsI	GCATC	3 cut(s)	364, 385, 510
BpmI	CTGGAG	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	510, 574
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	543
Bse1I	ACTGG	1 cut(s)	64
Bse21I	CCTNAGG	1 cut(s)	225
Bse3DI	GCAATG	2 cut(s)	462, 501
BseDI	CCNNGG	2 cut(s)	510, 574
BseGI	GGATG	1 cut(s)	366
BseLI	CCNNNNNNNGG	1 cut(s)	543
BseMI	GCAATG	2 cut(s)	462, 501
BseMII	CTCAG	2 cut(s)	90, 216
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	1 cut(s)	369
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	2 cut(s)	223, 254
BsiHKAI	GWGCWC	1 cut(s)	583
BsiSI	CCGG	1 cut(s)	185
BslI	CCNNNNNNNGG	1 cut(s)	543
BsmI	GAATGC	1 cut(s)	523
BsnI	GGCC	2 cut(s)	223, 254
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp143I	GATC	1 cut(s)	559
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	2 cut(s)	223, 254
BspCNI	CTCAG	2 cut(s)	91, 217
BspFNI	CGCG	1 cut(s)	47
BspMI	ACCTGC	2 cut(s)	216, 420
BspPI	GGATC	1 cut(s)	567
BsrDI	GCAATG	2 cut(s)	462, 501
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	510, 574
BssMI	GATC	1 cut(s)	559
BssT1I	CCWWGG	1 cut(s)	574
Bst4CI	ACNGT	1 cut(s)	31
BstDEI	CTNAG	2 cut(s)	99, 225
BstF5I	GGATG	1 cut(s)	366
BstFNI	CGCG	1 cut(s)	47
BstH2I	RGCGCY	2 cut(s)	202, 485
BstHHI	GCGC	3 cut(s)	49, 201, 484
BstKTI	GATC	1 cut(s)	562
BstMBI	GATC	1 cut(s)	559
BstMWI	GCNNNNNNNGC	2 cut(s)	297, 383
BstUI	CGCG	1 cut(s)	47
Bsu36I	CCTNAGG	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	223, 254
BtsCI	GGATG	1 cut(s)	366
BveI	ACCTGC	2 cut(s)	216, 420
CaiI	CAGNNNCTG	1 cut(s)	392
CfoI	GCGC	3 cut(s)	49, 201, 484
Cfr13I	GGNCC	2 cut(s)	252, 567
Csp6I	GTAC	3 cut(s)	103, 433, 445
CviAII	CATG	2 cut(s)	34, 383
CviJI	RGCY	4 cut(s)	223, 254, 466, 550
CviKI_1	RGCY	4 cut(s)	223, 254, 466, 550
CviQI	GTAC	3 cut(s)	103, 433, 445
DdeI	CTNAG	2 cut(s)	99, 225
DpnI	GATC	1 cut(s)	561
DpnII	GATC	1 cut(s)	559
Eco130I	CCWWGG	1 cut(s)	574
Eco147I	AGGCCT	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	567
Eco47III	AGCGCT	1 cut(s)	483
Eco57I	CTGAAG	2 cut(s)	324, 584
Eco81I	CCTNAGG	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	574
EcoT22I	ATGCAT	1 cut(s)	523
ErhI	CCWWGG	1 cut(s)	574
FaeI	CATG	2 cut(s)	37, 386
FaiI	YATR	6 cut(s)	35, 114, 357, 384, 449, 523
FatI	CATG	2 cut(s)	33, 382
FokI	GGATG	1 cut(s)	353
GlaI	GCGC	3 cut(s)	48, 200, 483
GsuI	CTGGAG	1 cut(s)	81
HaeII	RGCGCY	2 cut(s)	202, 485
HaeIII	GGCC	2 cut(s)	223, 254
HapII	CCGG	1 cut(s)	185
HhaI	GCGC	3 cut(s)	49, 201, 484
Hin1II	CATG	2 cut(s)	37, 386
Hin6I	GCGC	3 cut(s)	47, 199, 482
HinP1I	GCGC	3 cut(s)	47, 199, 482
HindIII	AAGCTT	1 cut(s)	548
HinfI	GANTC	1 cut(s)	389
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	2 cut(s)	371, 582
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188I	TCNGA	2 cut(s)	235, 394
Hpy188III	TCNNGA	1 cut(s)	544
Hpy8I	GTNNAC	1 cut(s)	246
Hpy99I	CGWCG	1 cut(s)	440
HpyAV	CCTTC	2 cut(s)	348, 558
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	2 cut(s)	386, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	297, 383
HpyF3I	CTNAG	2 cut(s)	99, 225
HpySE526I	ACGT	1 cut(s)	435
Hsp92II	CATG	2 cut(s)	37, 386
HspAI	GCGC	3 cut(s)	47, 199, 482
Kzo9I	GATC	1 cut(s)	559
LmnI	GCTCC	2 cut(s)	382, 586
LpnPI	CCDG	8 cut(s)	45, 198, 221, 237, 327, 384, 415, 529
LweI	GCATC	3 cut(s)	364, 385, 510
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	3 cut(s)	94, 359, 588
MalI	GATC	1 cut(s)	561
MboI	GATC	1 cut(s)	559
MboII	GAAGA	1 cut(s)	94
MhlI	GDGCHC	1 cut(s)	583
MluCI	AATT	3 cut(s)	67, 292, 410
MlyI	GAGTC	1 cut(s)	383
MnlI	CCTC	6 cut(s)	52, 134, 220, 344, 390, 505
Mph1103I	ATGCAT	1 cut(s)	523
MslI	CAYNNNNRTG	1 cut(s)	32
MspI	CCGG	1 cut(s)	185
Mva1269I	GAATGC	1 cut(s)	523
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	2 cut(s)	297, 383
NdeII	GATC	1 cut(s)	559
NlaIII	CATG	2 cut(s)	37, 386
NmuCI	GTSAC	3 cut(s)	94, 359, 588
NsiI	ATGCAT	1 cut(s)	523
PceI	AGGCCT	1 cut(s)	223
PctI	GAATGC	1 cut(s)	523
PflMI	CCANNNNNTGG	1 cut(s)	543
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
PspPI	GGNCC	2 cut(s)	252, 567
PstNI	CAGNNNCTG	1 cut(s)	392
RsaI	GTAC	3 cut(s)	104, 434, 446
RsaNI	GTAC	3 cut(s)	103, 433, 445
RseI	CAYNNNNRTG	1 cut(s)	32
Sau3AI	GATC	1 cut(s)	559
Sau96I	GGNCC	2 cut(s)	252, 567
ScaI	AGTACT	1 cut(s)	104
SchI	GAGTC	1 cut(s)	383
SduI	GDGCHC	1 cut(s)	583
SetI	ASST	9 cut(s)	210, 231, 340, 426, 434, 438, 468, 552, 576
SfaNI	GCATC	3 cut(s)	364, 385, 510
SinI	GGWCC	1 cut(s)	567
SmiMI	CAYNNNNRTG	1 cut(s)	32
Sse9I	AATT	3 cut(s)	67, 292, 410
SseBI	AGGCCT	1 cut(s)	223
SsiI	CCGC	1 cut(s)	45
SspI	AATATT	1 cut(s)	88
StuI	AGGCCT	1 cut(s)	223
StyI	CCWWGG	1 cut(s)	574
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	2 cut(s)	438, 562
TaqII	GACCGA	1 cut(s)	584
TasI	AATT	3 cut(s)	67, 292, 410
TatI	WGTACW	2 cut(s)	102, 444
TseFI	GTSAC	3 cut(s)	94, 359, 588
Tsp45I	GTSAC	3 cut(s)	94, 359, 588
TspDTI	ATGAA	3 cut(s)	95, 129, 295
Van91I	CCANNNNNTGG	1 cut(s)	543
VpaK11BI	GGWCC	1 cut(s)	567
ZrmI	AGTACT	1 cut(s)	104
Zsp2I	ATGCAT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.