Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a ATP6 static relative to the rotary elements
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0444761 |
| rosa_samantha | Rh4DG423200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 107, 222 |
| AccIII | TCCGGA | 1 cut(s) | 582 |
| AciI | CCGC | 2 cut(s) | 107, 220 |
| AclI | AACGTT | 1 cut(s) | 350 |
| AclWI | GGATC | 2 cut(s) | 351, 574 |
| AcoI | YGGCCR | 1 cut(s) | 168 |
| AcsI | RAATTY | 1 cut(s) | 400 |
| AcuI | CTGAAG | 1 cut(s) | 507 |
| AfaI | GTAC | 3 cut(s) | 292, 331, 391 |
| AgsI | TTSAA | 3 cut(s) | 136, 454, 502 |
| AjnI | CCWGG | 1 cut(s) | 264 |
| AluBI | AGCT | 4 cut(s) | 175, 437, 485, 556 |
| AluI | AGCT | 4 cut(s) | 175, 437, 485, 556 |
| Alw21I | GWGCWC | 1 cut(s) | 558 |
| Alw26I | GTCTC | 3 cut(s) | 187, 245, 317 |
| AlwI | GGATC | 2 cut(s) | 351, 574 |
| Ama87I | CYCGRG | 2 cut(s) | 248, 385 |
| Aor13HI | TCCGGA | 1 cut(s) | 582 |
| AoxI | GGCC | 3 cut(s) | 129, 168, 338 |
| ApeKI | GCWGC | 2 cut(s) | 74, 434 |
| ApoI | RAATTY | 1 cut(s) | 400 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 566 |
| AspLEI | GCGC | 2 cut(s) | 107, 224 |
| AvaI | CYCGRG | 2 cut(s) | 248, 385 |
| BalI | TGGCCA | 1 cut(s) | 170 |
| BanII | GRGCYC | 2 cut(s) | 38, 558 |
| Bbv12I | GWGCWC | 1 cut(s) | 558 |
| BbvCI | CCTCAGC | 1 cut(s) | 438 |
| BbvI | GCAGC | 2 cut(s) | 86, 446 |
| BccI | CCATC | 1 cut(s) | 155 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 187, 221 |
| BciT130I | CCWGG | 1 cut(s) | 266 |
| BciVI | GTATCC | 1 cut(s) | 366 |
| BcoDI | GTCTC | 3 cut(s) | 187, 245, 317 |
| BfaI | CTAG | 1 cut(s) | 21 |
| BfmI | CTRYAG | 1 cut(s) | 294 |
| BfuI | GTATCC | 1 cut(s) | 366 |
| BisI | GCNGC | 3 cut(s) | 75, 220, 435 |
| BlsI | GCNGC | 3 cut(s) | 76, 221, 436 |
| BmcAI | AGTACT | 1 cut(s) | 292 |
| Bme1390I | CCNGG | 1 cut(s) | 266 |
| BmeT110I | CYCGRG | 2 cut(s) | 248, 385 |
| BmiI | GGNNCC | 1 cut(s) | 270 |
| BmrFI | CCNGG | 1 cut(s) | 266 |
| BmrI | ACTGGG | 1 cut(s) | 166 |
| BmsI | GCATC | 2 cut(s) | 53, 396 |
| BmuI | ACTGGG | 1 cut(s) | 166 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 20, 52, 194, 226 |
| BpmI | CTGGAG | 1 cut(s) | 307 |
| Bpu10I | CCTNAGC | 2 cut(s) | 438, 552 |
| BpuEI | CTTGAG | 2 cut(s) | 22, 542 |
| BsaI | GGTCTC | 2 cut(s) | 245, 317 |
| BsaJI | CCNNGG | 1 cut(s) | 186 |
| BsaWI | WCCGGW | 1 cut(s) | 582 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 366, 396 |
| Bse1I | ACTGG | 2 cut(s) | 161, 290 |
| BseAI | TCCGGA | 1 cut(s) | 582 |
| BseBI | CCWGG | 1 cut(s) | 266 |
| BseDI | CCNNGG | 1 cut(s) | 186 |
| BseGI | GGATG | 3 cut(s) | 130, 166, 547 |
| BseMII | CTCAG | 3 cut(s) | 333, 429, 543 |
| BseNI | ACTGG | 2 cut(s) | 161, 290 |
| BseRI | GAGGAG | 1 cut(s) | 203 |
| BseXI | GCAGC | 2 cut(s) | 86, 446 |
| Bsh1236I | CGCG | 2 cut(s) | 107, 222 |
| BshFI | GGCC | 3 cut(s) | 131, 170, 340 |
| BsiHKAI | GWGCWC | 1 cut(s) | 558 |
| BsiHKCI | CYCGRG | 2 cut(s) | 248, 385 |
| BsiSI | CCGG | 1 cut(s) | 583 |
| BsmAI | GTCTC | 3 cut(s) | 187, 245, 317 |
| BsmBI | CGTCTC | 1 cut(s) | 187 |
| BsnI | GGCC | 3 cut(s) | 131, 170, 340 |
| Bso31I | GGTCTC | 2 cut(s) | 245, 317 |
| BsoBI | CYCGRG | 2 cut(s) | 248, 385 |
| Bsp1286I | GDGCHC | 2 cut(s) | 38, 558 |
| Bsp13I | TCCGGA | 1 cut(s) | 582 |
| Bsp1407I | TGTACA | 1 cut(s) | 329 |
| Bsp143I | GATC | 4 cut(s) | 49, 274, 356, 579 |
| BspACI | CCGC | 2 cut(s) | 107, 220 |
| BspANI | GGCC | 3 cut(s) | 131, 170, 340 |
| BspCNI | CTCAG | 3 cut(s) | 334, 430, 544 |
| BspEI | TCCGGA | 1 cut(s) | 582 |
| BspFNI | CGCG | 2 cut(s) | 107, 222 |
| BspLI | GGNNCC | 1 cut(s) | 270 |
| BspPI | GGATC | 2 cut(s) | 351, 574 |
| BspTNI | GGTCTC | 2 cut(s) | 245, 317 |
| BsrGI | TGTACA | 1 cut(s) | 329 |
| BsrI | ACTGG | 2 cut(s) | 161, 290 |
| BssECI | CCNNGG | 1 cut(s) | 186 |
| BssMI | GATC | 4 cut(s) | 49, 274, 356, 579 |
| Bst2UI | CCWGG | 1 cut(s) | 266 |
| Bst4CI | ACNGT | 2 cut(s) | 63, 378 |
| BstAUI | TGTACA | 1 cut(s) | 329 |
| BstC8I | GCNNGC | 1 cut(s) | 196 |
| BstDEI | CTNAG | 3 cut(s) | 342, 438, 552 |
| BstF5I | GGATG | 3 cut(s) | 130, 166, 547 |
| BstFNI | CGCG | 2 cut(s) | 107, 222 |
| BstHHI | GCGC | 2 cut(s) | 107, 224 |
| BstKTI | GATC | 4 cut(s) | 52, 277, 359, 582 |
| BstMAI | GTCTC | 3 cut(s) | 187, 245, 317 |
| BstMBI | GATC | 4 cut(s) | 49, 274, 356, 579 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 137 |
| BstNI | CCWGG | 1 cut(s) | 266 |
| BstSCI | CCNGG | 1 cut(s) | 264 |
| BstSFI | CTRYAG | 1 cut(s) | 294 |
| BstUI | CGCG | 2 cut(s) | 107, 222 |
| BstV1I | GCAGC | 2 cut(s) | 86, 446 |
| BstX2I | RGATCY | 2 cut(s) | 356, 579 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 369 |
| BstYI | RGATCY | 2 cut(s) | 356, 579 |
| BsuI | GTATCC | 1 cut(s) | 366 |
| BsuRI | GGCC | 3 cut(s) | 131, 170, 340 |
| BtsCI | GGATG | 3 cut(s) | 130, 166, 547 |
| Cac8I | GCNNGC | 1 cut(s) | 196 |
| CfoI | GCGC | 2 cut(s) | 107, 224 |
| Csp6I | GTAC | 3 cut(s) | 291, 330, 390 |
| CviAII | CATG | 2 cut(s) | 166, 520 |
| CviQI | GTAC | 3 cut(s) | 291, 330, 390 |
| DdeI | CTNAG | 3 cut(s) | 342, 438, 552 |
| DpnI | GATC | 4 cut(s) | 51, 276, 358, 581 |
| DpnII | GATC | 4 cut(s) | 49, 274, 356, 579 |
| EaeI | YGGCCR | 1 cut(s) | 168 |
| Ecl136II | GAGCTC | 1 cut(s) | 556 |
| Eco147I | AGGCCT | 1 cut(s) | 340 |
| Eco24I | GRGCYC | 2 cut(s) | 38, 558 |
| Eco31I | GGTCTC | 2 cut(s) | 245, 317 |
| Eco53kI | GAGCTC | 1 cut(s) | 556 |
| Eco57I | CTGAAG | 1 cut(s) | 507 |
| Eco88I | CYCGRG | 2 cut(s) | 248, 385 |
| EcoICRI | GAGCTC | 1 cut(s) | 556 |
| EcoRII | CCWGG | 1 cut(s) | 264 |
| EcoT22I | ATGCAT | 1 cut(s) | 411 |
| EcoT38I | GRGCYC | 2 cut(s) | 38, 558 |
| Esp3I | CGTCTC | 1 cut(s) | 187 |
| FaeI | CATG | 2 cut(s) | 169, 523 |
| FaiI | YATR | 5 cut(s) | 9, 167, 328, 368, 521 |
| FatI | CATG | 2 cut(s) | 165, 519 |
| FauI | CCCGC | 1 cut(s) | 100 |
| Fnu4HI | GCNGC | 3 cut(s) | 75, 220, 435 |
| FokI | GGATG | 3 cut(s) | 137, 173, 534 |
| FriOI | GRGCYC | 2 cut(s) | 38, 558 |
| Fsp4HI | GCNGC | 3 cut(s) | 75, 220, 435 |
| FspBI | CTAG | 1 cut(s) | 21 |
| GlaI | GCGC | 2 cut(s) | 106, 223 |
| GluI | GCNGC | 3 cut(s) | 75, 220, 435 |
| GsuI | CTGGAG | 1 cut(s) | 307 |
| HaeIII | GGCC | 3 cut(s) | 131, 170, 340 |
| HapII | CCGG | 1 cut(s) | 583 |
| HhaI | GCGC | 2 cut(s) | 107, 224 |
| Hin1II | CATG | 2 cut(s) | 169, 523 |
| Hin6I | GCGC | 2 cut(s) | 105, 222 |
| HinP1I | GCGC | 2 cut(s) | 105, 222 |
| HincII | GTYRAC | 1 cut(s) | 238 |
| HindII | GTYRAC | 1 cut(s) | 238 |
| HindIII | AAGCTT | 1 cut(s) | 173 |
| HinfI | GANTC | 1 cut(s) | 458 |
| HpaI | GTTAAC | 1 cut(s) | 238 |
| HpaII | CCGG | 1 cut(s) | 583 |
| Hpy166II | GTNNAC | 2 cut(s) | 238, 470 |
| Hpy188I | TCNGA | 4 cut(s) | 49, 58, 187, 463 |
| Hpy188III | TCNNGA | 6 cut(s) | 250, 314, 385, 551, 559, 583 |
| Hpy8I | GTNNAC | 2 cut(s) | 238, 470 |
| HpyAV | CCTTC | 5 cut(s) | 25, 142, 235, 448, 469 |
| HpyCH4III | ACNGT | 2 cut(s) | 63, 378 |
| HpyCH4IV | ACGT | 1 cut(s) | 350 |
| HpyCH4V | TGCA | 1 cut(s) | 409 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 137 |
| HpyF3I | CTNAG | 3 cut(s) | 342, 438, 552 |
| HpySE526I | ACGT | 1 cut(s) | 350 |
| Hsp92II | CATG | 2 cut(s) | 169, 523 |
| HspAI | GCGC | 2 cut(s) | 105, 222 |
| Kpn2I | TCCGGA | 1 cut(s) | 582 |
| KspAI | GTTAAC | 1 cut(s) | 238 |
| Kzo9I | GATC | 4 cut(s) | 49, 274, 356, 579 |
| LmnI | GCTCC | 1 cut(s) | 89 |
| LpnPI | CCDG | 9 cut(s) | 142, 251, 271, 278, 282, 285, 354, 564, 596 |
| Lsp1109I | GCAGC | 2 cut(s) | 86, 446 |
| LweI | GCATC | 2 cut(s) | 53, 396 |
| MaeI | CTAG | 1 cut(s) | 21 |
| MaeII | ACGT | 1 cut(s) | 350 |
| MaeIII | GTNAC | 1 cut(s) | 378 |
| MalI | GATC | 4 cut(s) | 51, 276, 358, 581 |
| MboI | GATC | 4 cut(s) | 49, 274, 356, 579 |
| MboII | GAAGA | 5 cut(s) | 94, 124, 160, 514, 574 |
| MflI | RGATCY | 2 cut(s) | 356, 579 |
| MhlI | GDGCHC | 2 cut(s) | 38, 558 |
| MlsI | TGGCCA | 1 cut(s) | 170 |
| MluCI | AATT | 2 cut(s) | 305, 400 |
| MluNI | TGGCCA | 1 cut(s) | 170 |
| MlyI | GAGTC | 1 cut(s) | 467 |
| Mox20I | TGGCCA | 1 cut(s) | 170 |
| Mph1103I | ATGCAT | 1 cut(s) | 411 |
| MroI | TCCGGA | 1 cut(s) | 582 |
| MroXI | GAANNNNTTC | 1 cut(s) | 566 |
| MscI | TGGCCA | 1 cut(s) | 170 |
| MseI | TTAA | 2 cut(s) | 237, 353 |
| Msp20I | TGGCCA | 1 cut(s) | 170 |
| MspA1I | CMGCKG | 1 cut(s) | 437 |
| MspI | CCGG | 1 cut(s) | 583 |
| MspR9I | CCNGG | 1 cut(s) | 266 |
| MvaI | CCWGG | 1 cut(s) | 266 |
| MvnI | CGCG | 2 cut(s) | 107, 222 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 137 |
| NdeII | GATC | 4 cut(s) | 49, 274, 356, 579 |
| NlaIII | CATG | 2 cut(s) | 169, 523 |
| NlaIV | GGNNCC | 1 cut(s) | 270 |
| NmuCI | GTSAC | 1 cut(s) | 378 |
| NsiI | ATGCAT | 1 cut(s) | 411 |
| PaeR7I | CTCGAG | 1 cut(s) | 248 |
| PceI | AGGCCT | 1 cut(s) | 340 |
| PdmI | GAANNNNTTC | 1 cut(s) | 566 |
| PkrI | GCNGC | 3 cut(s) | 76, 221, 436 |
| PleI | GAGTC | 1 cut(s) | 466 |
| PpsI | GAGTC | 1 cut(s) | 466 |
| Psp124BI | GAGCTC | 1 cut(s) | 558 |
| Psp1406I | AACGTT | 1 cut(s) | 350 |
| Psp6I | CCWGG | 1 cut(s) | 264 |
| PspGI | CCWGG | 1 cut(s) | 264 |
| PspN4I | GGNNCC | 1 cut(s) | 270 |
| PsuI | RGATCY | 2 cut(s) | 356, 579 |
| PvuII | CAGCTG | 1 cut(s) | 437 |
| RsaI | GTAC | 3 cut(s) | 292, 331, 391 |
| RsaNI | GTAC | 3 cut(s) | 291, 330, 390 |
| SacI | GAGCTC | 1 cut(s) | 558 |
| SaqAI | TTAA | 2 cut(s) | 237, 353 |
| SatI | GCNGC | 3 cut(s) | 75, 220, 435 |
| Sau3AI | GATC | 4 cut(s) | 49, 274, 356, 579 |
| ScaI | AGTACT | 1 cut(s) | 292 |
| SchI | GAGTC | 1 cut(s) | 467 |
| ScrFI | CCNGG | 1 cut(s) | 266 |
| SduI | GDGCHC | 2 cut(s) | 38, 558 |
| SetI | ASST | 7 cut(s) | 177, 237, 274, 353, 439, 487, 558 |
| SfaNI | GCATC | 2 cut(s) | 53, 396 |
| SfcI | CTRYAG | 1 cut(s) | 294 |
| Sfr274I | CTCGAG | 1 cut(s) | 248 |
| SlaI | CTCGAG | 1 cut(s) | 248 |
| SmlI | CTYRAG | 3 cut(s) | 37, 248, 557 |
| SmoI | CTYRAG | 3 cut(s) | 37, 248, 557 |
| Sse9I | AATT | 2 cut(s) | 305, 400 |
| SseBI | AGGCCT | 1 cut(s) | 340 |
| SsiI | CCGC | 2 cut(s) | 107, 220 |
| SspMI | CTAG | 1 cut(s) | 21 |
| SstI | GAGCTC | 1 cut(s) | 558 |
| StuI | AGGCCT | 1 cut(s) | 340 |
| StyD4I | CCNGG | 1 cut(s) | 264 |
| TaaI | ACNGT | 2 cut(s) | 63, 378 |
| TaiI | ACGT | 1 cut(s) | 353 |
| TaqI | TCGA | 4 cut(s) | 228, 249, 315, 570 |
| TasI | AATT | 2 cut(s) | 305, 400 |
| TatI | WGTACW | 3 cut(s) | 290, 329, 389 |
| TauI | GCSGC | 1 cut(s) | 222 |
| Tru1I | TTAA | 2 cut(s) | 237, 353 |
| Tru9I | TTAA | 2 cut(s) | 237, 353 |
| TseFI | GTSAC | 1 cut(s) | 378 |
| TseI | GCWGC | 2 cut(s) | 74, 434 |
| Tsp45I | GTSAC | 1 cut(s) | 378 |
| TspDTI | ATGAA | 1 cut(s) | 546 |
| XapI | RAATTY | 1 cut(s) | 400 |
| XhoI | CTCGAG | 1 cut(s) | 248 |
| XmnI | GAANNNNTTC | 1 cut(s) | 566 |
| XspI | CTAG | 1 cut(s) | 21 |
| ZrmI | AGTACT | 1 cut(s) | 292 |
| Zsp2I | ATGCAT | 1 cut(s) | 411 |