RchiOBHm_Chr4g0446321

Coiled-coil domain containing protein (DUF2052)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Forward (+)
66544010 .. 66545242
1233 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 291 bp
ATGAGGGAGGGAGAGCCCTACTTGCATCATGAGTATGTGGGGAAGTTTCAGGTTTCGAGTTGTAGGAGCACGGCAAGACCTGGGGAGCGGTGTGAGCAGGCAACTGTATCTGCAGAAGAGTTGCAAGATCTGATGGACCAGTTCACCTACATCATGCATGAGAAATTTTTGTTAGGAGAAGATCACGAGTACTTAGATTACTCAAAGATAGACAATGACGAGACATTGGATGATCACTGGCAGAGAGAAGCCAACCATGACGCTGAAGAGAAGTACTTTAATGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2052

Protein Analysis

96

Amino Acids

11.49

Weight (kDa)

4.5

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCD97-like_C PF09747 32 - 96 1.9e-18 Coiled-coil domain containing protein 97-like, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 88
AciI CCGC 1 cut(s) 88
AcsI RAATTY 1 cut(s) 164
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 2 cut(s) 191, 275
AjnI CCWGG 1 cut(s) 79
Alw21I GWGCWC 1 cut(s) 71
Alw26I GTCTC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 136
AsuHPI GGTGA 1 cut(s) 136
AvaII GGWCC 1 cut(s) 136
BanII GRGCYC 1 cut(s) 18
BauI CACGAG 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 71
BccI CCATC 1 cut(s) 127
BceAI ACGGC 1 cut(s) 87
BciT130I CCWGG 1 cut(s) 81
BclI TGATCA 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 215
BfmI CTRYAG 1 cut(s) 111
BglII AGATCT 1 cut(s) 127
BmcAI AGTACT 2 cut(s) 191, 275
Bme1390I CCNGG 1 cut(s) 81
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 80
Bse1I ACTGG 2 cut(s) 139, 242
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 80
BseGI GGATG 1 cut(s) 235
BseNI ACTGG 2 cut(s) 139, 242
BsiHKAI GWGCWC 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 215
Bsp1286I GDGCHC 2 cut(s) 18, 71
Bsp143I GATC 3 cut(s) 127, 181, 232
BspACI CCGC 1 cut(s) 88
BspHI TCATGA 1 cut(s) 28
BspMAI CTGCAG 1 cut(s) 115
BsrBI CCGCTC 1 cut(s) 88
BsrI ACTGG 2 cut(s) 139, 242
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 3 cut(s) 127, 181, 232
BssSI CACGAG 1 cut(s) 185
Bst2BI CACGAG 1 cut(s) 185
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 2 cut(s) 111, 261
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 193
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 3 cut(s) 130, 184, 235
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 3 cut(s) 127, 181, 232
BstMWI GCNNNNNNNGC 2 cut(s) 22, 94
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 79
BstSFI CTRYAG 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 235
Cac8I GCNNGC 1 cut(s) 99
CciI TCATGA 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 136
CseI GACGC 1 cut(s) 269
Csp6I GTAC 2 cut(s) 190, 274
CviAII CATG 4 cut(s) 29, 154, 158, 257
CviJI RGCY 2 cut(s) 16, 251
CviKI_1 RGCY 2 cut(s) 16, 251
CviQI GTAC 2 cut(s) 190, 274
DdeI CTNAG 1 cut(s) 193
DpnI GATC 3 cut(s) 129, 183, 234
DpnII GATC 3 cut(s) 127, 181, 232
Eam1104I CTCTTC 2 cut(s) 111, 261
EarI CTCTTC 2 cut(s) 111, 261
Eco24I GRGCYC 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 79
EcoT22I ATGCAT 1 cut(s) 159
EcoT38I GRGCYC 1 cut(s) 18
FaeI CATG 4 cut(s) 32, 157, 161, 260
FaiI YATR 5 cut(s) 30, 36, 155, 159, 258
FatI CATG 4 cut(s) 28, 153, 157, 256
FbaI TGATCA 1 cut(s) 232
FokI GGATG 1 cut(s) 242
FriOI GRGCYC 1 cut(s) 18
HgaI GACGC 1 cut(s) 269
Hin1II CATG 4 cut(s) 32, 157, 161, 260
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 144
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 2 cut(s) 29, 185
Hpy8I GTNNAC 1 cut(s) 144
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4V TGCA 4 cut(s) 25, 113, 124, 157
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 94
HpyF3I CTNAG 1 cut(s) 193
Hsp92II CATG 4 cut(s) 32, 157, 161, 260
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 3 cut(s) 127, 181, 232
LmnI GCTCC 2 cut(s) 66, 85
LpnPI CCDG 6 cut(s) 35, 66, 83, 93, 152, 223
LweI GCATC 1 cut(s) 34
MalI GATC 3 cut(s) 129, 183, 234
MbiI CCGCTC 1 cut(s) 88
MboI GATC 3 cut(s) 127, 181, 232
MboII GAAGA 3 cut(s) 128, 191, 278
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 2 cut(s) 18, 71
MluCI AATT 1 cut(s) 164
MnlI CCTC 1 cut(s) 277
Mph1103I ATGCAT 1 cut(s) 159
MseI TTAA 2 cut(s) 279, 289
MslI CAYNNNNRTG 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 81
MwoI GCNNNNNNNGC 2 cut(s) 22, 94
NdeII GATC 3 cut(s) 127, 181, 232
NlaIII CATG 4 cut(s) 32, 157, 161, 260
NsiI ATGCAT 1 cut(s) 159
PagI TCATGA 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspPI GGNCC 1 cut(s) 136
PstI CTGCAG 1 cut(s) 115
PsuI RGATCY 1 cut(s) 127
RsaI GTAC 2 cut(s) 191, 275
RsaNI GTAC 2 cut(s) 190, 274
RseI CAYNNNNRTG 1 cut(s) 33
SaqAI TTAA 2 cut(s) 279, 289
Sau3AI GATC 3 cut(s) 127, 181, 232
Sau96I GGNCC 1 cut(s) 136
ScaI AGTACT 2 cut(s) 191, 275
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 2 cut(s) 18, 71
SetI ASST 3 cut(s) 54, 82, 149
SfaNI GCATC 1 cut(s) 34
SfcI CTRYAG 1 cut(s) 111
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 33
Sse9I AATT 1 cut(s) 164
SsiI CCGC 1 cut(s) 88
StyD4I CCNGG 1 cut(s) 79
TaaI ACNGT 1 cut(s) 106
TaqI TCGA 1 cut(s) 56
TasI AATT 1 cut(s) 164
TatI WGTACW 2 cut(s) 189, 273
Tru1I TTAA 2 cut(s) 279, 289
Tru9I TTAA 2 cut(s) 279, 289
TscAI CASTG 1 cut(s) 242
TspRI CASTG 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 136
XapI RAATTY 1 cut(s) 164
ZrmI AGTACT 2 cut(s) 191, 275
Zsp2I ATGCAT 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.