Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

66779305 .. 66785802

Gene Structure 6498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGCTGCCACCTCAATCATCAATCCATTCTTCACCACAGTTGGCATATCAACCTTCTGTACCTCATGAATACTGCAGCACTAGTGGCAACCAACTAGTCCAAATGACTGGAAATGCTCCTCATGGGGGTGCTATTGATTCTGCTGTGAAAACCGAAATGTTTCCGCAGCAGCAAGCTTGCTTTGTCCCAGCAGGAGTATGTGGCCCTCGAGAACCTTCTGGATTTAATTCTACGAGGCAAGTAGAGCATGGACACAGTGACATTTTCATAAACACACAAGTCTCTCAACCAAACCAACAGGTCCAACAATTTCAACAAGGTAATGCACCTTTTGCTCCTAGACCTTTACCTCCAGCCCCGCCACAAAATCCATCCAGTCACTTCTCCTATGCAAAGCCCCCAGTTCAACAACATCCCCAGCATCCGTACCGCCCCCCATACCCTTTGCCACCCGTTCCTGATAATCAGAGACGATTTGTTACCGATGAACAACGGGGTGTCTGGATAAATGGAGGGAGGCCTCCTCACCCAGGGCCACCATTTGGCCATGAAGGTTTTTTTCGGCCACCAGTTGAGAGGCCACCAGCAAATAATATGAATTTTCAACGTCCTGCTCCTAATAATGTACCCTCTGGAGCTCCAATATCAGGTCATAGTGCTGCTCAGATCTTGCCGTGTAGGCCTGATATTTCTGCTGTTAATTGTTGGAGACCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009506 GO:0009605 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0040034 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046483 GO:0048367 GO:0048437 GO:0048497 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0055044 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0090700 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTD_bind PWWP

Protein Analysis

239

Amino Acids

26.08

Weight (kDa)

8.71

Isoelectric Point (pI)

66.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	542
AciI	CCGC	3 cut(s)	164, 359, 430
AcoI	YGGCCR	2 cut(s)	544, 563
AcsI	RAATTY	1 cut(s)	598
AfaI	GTAC	3 cut(s)	60, 428, 627
AfiI	CCNNNNNNNGG	4 cut(s)	125, 530, 542, 647
AgsI	TTSAA	3 cut(s)	314, 407, 605
AhlI	ACTAGT	2 cut(s)	80, 94
AjnI	CCWGG	1 cut(s)	529
AluBI	AGCT	3 cut(s)	176, 638, 716
AluI	AGCT	3 cut(s)	176, 638, 716
Alw21I	GWGCWC	1 cut(s)	640
Alw26I	GTCTC	3 cut(s)	286, 463, 703
Ama87I	CYCGRG	1 cut(s)	207
AoxI	GGCC	7 cut(s)	202, 518, 533, 544, 563, 578, 680
ApeKI	GCWGC	5 cut(s)	4, 75, 166, 169, 659
ApoI	RAATTY	1 cut(s)	598
Asp700I	GAANNNNTTC	1 cut(s)	159
AspS9I	GGNCC	3 cut(s)	203, 301, 533
AsuHPI	GGTGA	2 cut(s)	24, 518
AvaI	CYCGRG	1 cut(s)	207
AvaII	GGWCC	1 cut(s)	301
BalI	TGGCCA	1 cut(s)	546
BanII	GRGCYC	1 cut(s)	640
Bbv12I	GWGCWC	1 cut(s)	640
BbvI	GCAGC	4 cut(s)	87, 178, 181, 646
BccI	CCATC	1 cut(s)	379
BceAI	ACGGC	1 cut(s)	658
BciT130I	CCWGG	1 cut(s)	531
BcoDI	GTCTC	3 cut(s)	286, 463, 703
BcuI	ACTAGT	2 cut(s)	80, 94
BfaI	CTAG	3 cut(s)	81, 95, 339
BfmI	CTRYAG	1 cut(s)	73
BglI	GCCNNNNNGGC	1 cut(s)	679
BglII	AGATCT	1 cut(s)	666
BisI	GCNGC	5 cut(s)	5, 76, 167, 170, 660
BlsI	GCNGC	5 cut(s)	6, 77, 168, 171, 661
Bme1390I	CCNGG	1 cut(s)	531
Bme18I	GGWCC	1 cut(s)	301
BmeT110I	CYCGRG	1 cut(s)	207
BmgT120I	GGNCC	3 cut(s)	203, 301, 533
BmrFI	CCNGG	1 cut(s)	531
BmrI	ACTGGG	1 cut(s)	395
BmsI	GCATC	1 cut(s)	430
BmuI	ACTGGG	1 cut(s)	395
BplI	GAGNNNNNCTC	2 cut(s)	508, 540
BpmI	CTGGAG	2 cut(s)	336, 654
BsaI	GGTCTC	1 cut(s)	703
BsaJI	CCNNGG	2 cut(s)	529, 530
Bsc4I	CCNNNNNNNGG	4 cut(s)	125, 530, 542, 647
Bse1I	ACTGG	4 cut(s)	112, 375, 401, 569
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	2 cut(s)	529, 530
BseGI	GGATG	3 cut(s)	371, 412, 421
BseLI	CCNNNNNNNGG	4 cut(s)	125, 530, 542, 647
BseMII	CTCAG	1 cut(s)	677
BseNI	ACTGG	4 cut(s)	112, 375, 401, 569
BseRI	GAGGAG	2 cut(s)	108, 513
BseXI	GCAGC	4 cut(s)	87, 178, 181, 646
BseYI	CCCAGC	2 cut(s)	187, 417
BshFI	GGCC	7 cut(s)	204, 520, 535, 546, 565, 580, 682
BsiHKAI	GWGCWC	1 cut(s)	640
BsiHKCI	CYCGRG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	4 cut(s)	125, 530, 542, 647
BsmAI	GTCTC	3 cut(s)	286, 463, 703
BsmBI	CGTCTC	1 cut(s)	463
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	7 cut(s)	204, 520, 535, 546, 565, 580, 682
Bso31I	GGTCTC	1 cut(s)	703
BsoBI	CYCGRG	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	640
Bsp143I	GATC	1 cut(s)	666
BspACI	CCGC	3 cut(s)	164, 359, 430
BspANI	GGCC	7 cut(s)	204, 520, 535, 546, 565, 580, 682
BspCNI	CTCAG	1 cut(s)	676
BspHI	TCATGA	1 cut(s)	64
BspMAI	CTGCAG	1 cut(s)	77
BspTNI	GGTCTC	1 cut(s)	703
BsrI	ACTGG	4 cut(s)	112, 375, 401, 569
BssECI	CCNNGG	2 cut(s)	529, 530
BssMI	GATC	1 cut(s)	666
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	2 cut(s)	39, 257
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstC8I	GCNNGC	2 cut(s)	174, 178
BstDEI	CTNAG	1 cut(s)	663
BstENI	CCTNNNNNAGG	1 cut(s)	528
BstF5I	GGATG	3 cut(s)	371, 412, 421
BstKTI	GATC	1 cut(s)	669
BstMAI	GTCTC	3 cut(s)	286, 463, 703
BstMBI	GATC	1 cut(s)	666
BstMWI	GCNNNNNNNGC	4 cut(s)	84, 244, 332, 679
BstNI	CCWGG	1 cut(s)	531
BstSCI	CCNGG	1 cut(s)	529
BstSFI	CTRYAG	1 cut(s)	73
BstV1I	GCAGC	4 cut(s)	87, 178, 181, 646
BstX2I	RGATCY	1 cut(s)	666
BstXI	CCANNNNNNTGG	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	666
BsuRI	GGCC	7 cut(s)	204, 520, 535, 546, 565, 580, 682
BtsCI	GGATG	3 cut(s)	371, 412, 421
BtsIMutI	CAGTG	1 cut(s)	262
Cac8I	GCNNGC	2 cut(s)	174, 178
CciI	TCATGA	1 cut(s)	64
Cfr13I	GGNCC	3 cut(s)	203, 301, 533
Csp6I	GTAC	3 cut(s)	59, 427, 626
CviAII	CATG	4 cut(s)	65, 122, 248, 548
CviQI	GTAC	3 cut(s)	59, 427, 626
DdeI	CTNAG	1 cut(s)	663
DpnI	GATC	1 cut(s)	668
DpnII	GATC	1 cut(s)	666
EaeI	YGGCCR	2 cut(s)	544, 563
Ecl136II	GAGCTC	1 cut(s)	638
Eco147I	AGGCCT	2 cut(s)	520, 682
Eco24I	GRGCYC	1 cut(s)	640
Eco31I	GGTCTC	1 cut(s)	703
Eco47I	GGWCC	1 cut(s)	301
Eco53kI	GAGCTC	1 cut(s)	638
Eco88I	CYCGRG	1 cut(s)	207
EcoICRI	GAGCTC	1 cut(s)	638
EcoNI	CCTNNNNNAGG	1 cut(s)	528
EcoRII	CCWGG	1 cut(s)	529
EcoT38I	GRGCYC	1 cut(s)	640
Esp3I	CGTCTC	1 cut(s)	463
FaeI	CATG	4 cut(s)	68, 125, 251, 551
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	4 cut(s)	64, 121, 247, 547
FauI	CCCGC	1 cut(s)	366
Fnu4HI	GCNGC	5 cut(s)	5, 76, 167, 170, 660
FokI	GGATG	3 cut(s)	358, 399, 408
FriOI	GRGCYC	1 cut(s)	640
Fsp4HI	GCNGC	5 cut(s)	5, 76, 167, 170, 660
FspBI	CTAG	3 cut(s)	81, 95, 339
GluI	GCNGC	5 cut(s)	5, 76, 167, 170, 660
GsaI	CCCAGC	2 cut(s)	191, 421
GsuI	CTGGAG	2 cut(s)	336, 654
HaeIII	GGCC	7 cut(s)	204, 520, 535, 546, 565, 580, 682
Hin1II	CATG	4 cut(s)	68, 125, 251, 551
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	1 cut(s)	137
HphI	GGTGA	2 cut(s)	24, 518
Hpy188I	TCNGA	2 cut(s)	468, 666
Hpy188III	TCNNGA	6 cut(s)	65, 209, 219, 458, 502, 633
HpyAV	CCTTC	3 cut(s)	63, 225, 545
HpyCH4III	ACNGT	2 cut(s)	39, 257
HpyCH4IV	ACGT	1 cut(s)	607
HpyCH4V	TGCA	3 cut(s)	75, 326, 392
HpyF10VI	GCNNNNNNNGC	4 cut(s)	84, 244, 332, 679
HpyF3I	CTNAG	1 cut(s)	663
HpySE526I	ACGT	1 cut(s)	607
Hsp92II	CATG	4 cut(s)	68, 125, 251, 551
Kzo9I	GATC	1 cut(s)	666
LmnI	GCTCC	5 cut(s)	121, 340, 619, 635, 643
Lsp1109I	GCAGC	4 cut(s)	87, 178, 181, 646
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	3 cut(s)	81, 95, 339
MaeII	ACGT	1 cut(s)	607
MaeIII	GTNAC	3 cut(s)	257, 377, 478
MalI	GATC	1 cut(s)	668
MboI	GATC	1 cut(s)	666
MboII	GAAGA	1 cut(s)	21
MflI	RGATCY	1 cut(s)	666
MhlI	GDGCHC	1 cut(s)	640
MlsI	TGGCCA	1 cut(s)	546
MluCI	AATT	4 cut(s)	226, 308, 598, 700
MluNI	TGGCCA	1 cut(s)	546
MmeI	TCCRAC	2 cut(s)	328, 686
Mox20I	TGGCCA	1 cut(s)	546
MroXI	GAANNNNTTC	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	546
MseI	TTAA	3 cut(s)	225, 699, 718
MslI	CAYNNNNRTG	1 cut(s)	126
Msp20I	TGGCCA	1 cut(s)	546
MspR9I	CCNGG	1 cut(s)	531
MvaI	CCWGG	1 cut(s)	531
MwoI	GCNNNNNNNGC	4 cut(s)	84, 244, 332, 679
NdeII	GATC	1 cut(s)	666
NlaIII	CATG	4 cut(s)	68, 125, 251, 551
NmuCI	GTSAC	2 cut(s)	257, 377
PaeR7I	CTCGAG	1 cut(s)	207
PagI	TCATGA	1 cut(s)	64
PasI	CCCWGGG	1 cut(s)	530
PceI	AGGCCT	2 cut(s)	520, 682
PdmI	GAANNNNTTC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	137
PflMI	CCANNNNNTGG	1 cut(s)	542
PkrI	GCNGC	5 cut(s)	6, 77, 168, 171, 661
Psp124BI	GAGCTC	1 cut(s)	640
Psp6I	CCWGG	1 cut(s)	529
PspFI	CCCAGC	2 cut(s)	187, 417
PspGI	CCWGG	1 cut(s)	529
PspPI	GGNCC	3 cut(s)	203, 301, 533
PstI	CTGCAG	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	666
RsaI	GTAC	3 cut(s)	60, 428, 627
RsaNI	GTAC	3 cut(s)	59, 427, 626
RseI	CAYNNNNRTG	1 cut(s)	126
SacI	GAGCTC	1 cut(s)	640
SaqAI	TTAA	3 cut(s)	225, 699, 718
SatI	GCNGC	5 cut(s)	5, 76, 167, 170, 660
Sau3AI	GATC	1 cut(s)	666
Sau96I	GGNCC	3 cut(s)	203, 301, 533
ScrFI	CCNGG	1 cut(s)	531
SduI	GDGCHC	1 cut(s)	640
SfaNI	GCATC	1 cut(s)	430
SfcI	CTRYAG	1 cut(s)	73
Sfr274I	CTCGAG	1 cut(s)	207
SinI	GGWCC	1 cut(s)	301
SlaI	CTCGAG	1 cut(s)	207
SmiMI	CAYNNNNRTG	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
SpeI	ACTAGT	2 cut(s)	80, 94
Sse9I	AATT	4 cut(s)	226, 308, 598, 700
SseBI	AGGCCT	2 cut(s)	520, 682
SsiI	CCGC	3 cut(s)	164, 359, 430
SspMI	CTAG	3 cut(s)	81, 95, 339
SstI	GAGCTC	1 cut(s)	640
StuI	AGGCCT	2 cut(s)	520, 682
StyD4I	CCNGG	1 cut(s)	529
TaaI	ACNGT	2 cut(s)	39, 257
TaiI	ACGT	1 cut(s)	610
TaqI	TCGA	1 cut(s)	208
TasI	AATT	4 cut(s)	226, 308, 598, 700
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	3 cut(s)	225, 699, 718
Tru9I	TTAA	3 cut(s)	225, 699, 718
TscAI	CASTG	1 cut(s)	262
TseFI	GTSAC	2 cut(s)	257, 377
TseI	GCWGC	5 cut(s)	4, 75, 166, 169, 659
Tsp45I	GTSAC	2 cut(s)	257, 377
TspDTI	ATGAA	5 cut(s)	81, 256, 501, 564, 611
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	1 cut(s)	262
Van91I	CCANNNNNTGG	1 cut(s)	542
VpaK11BI	GGWCC	1 cut(s)	301
XagI	CCTNNNNNAGG	1 cut(s)	528
XapI	RAATTY	1 cut(s)	598
XhoI	CTCGAG	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	159
XspI	CTAG	3 cut(s)	81, 95, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.