Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

459884 .. 466137

Gene Structure 6254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGGGCAGAAGTCGCTGATGTACGCGTTCGTGGCGCGAGGCACTGTGATTCTGGCCGAGCACACCGAATTCAGCGGCAATTTCAACTCCATACATAGCCTTCCAGAGTCTCCAGAAGCTTCCGGCCACCAACAACAAGTTCACCTACAACTGCGACGGTCACACCTTCAATTACCTCGTCGACAATGGCTATATGCGTTAGCATACTGTGTGGTGGCGGATGAATCAGTTGGAAGACAAGTGCCTATTGCTTTTCTGGAGCGTGCCAAGGATGATTTTGTTGTGAAATATGGTGGTGGGAAGGCCGCTACGGCTGCTGCCAACAGTCTTAACAAGGAATTTGGGTCAAAATTGAAGGAACATATGCAATACTGTGTTGATCATCCTGAAGAAATAGGCAAGCTTGCTAAGGTTAAGGCCCAGGTTTCAGAAGTTAAAGGTGTTATGATGGAAAACATTGAAAAGGTTTTGGATAGAGGGGAAAAGATAGAGCTTTTGGTTGATAAGACTGAGACCCTTCATCATCAGGCACAGAATTTCCGGAATGTTGGGACTGAAATGAGAAGGAAGATGTGGCTGCAGAACATGAAGGTAAGATTGAGAGAGGAGAGGAGAGAGATGATGACGGGGGTTCGGGGACGATCTGCTGGGCCTAGGGTTAGGGCGGAGTCGATGGATGCTAGGGCAATGGCTGGTCGTGGGGATCACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0097708 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

237

Amino Acids

26.86

Weight (kDa)

9.46

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	67 - 115	5.7e-10	Regulated-SNARE-like domain
Synaptobrevin	PF00957	134 - 199	7.4e-24	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	181
AccII	CGCG	2 cut(s)	26, 37
AccIII	TCCGGA	1 cut(s)	540
AciI	CCGC	4 cut(s)	75, 218, 306, 665
AclWI	GGATC	1 cut(s)	711
AcoI	YGGCCR	2 cut(s)	54, 124
AcsI	RAATTY	3 cut(s)	68, 338, 535
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	1 cut(s)	23
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	4 cut(s)	85, 170, 355, 461
AjnI	CCWGG	1 cut(s)	420
AjuI	GAANNNNNNNTTGG	2 cut(s)	123, 155
AluBI	AGCT	3 cut(s)	119, 403, 493
AluI	AGCT	3 cut(s)	119, 403, 493
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	2 cut(s)	114, 506
AlwI	GGATC	1 cut(s)	711
Aor13HI	TCCGGA	1 cut(s)	540
AoxI	GGCC	5 cut(s)	54, 124, 303, 417, 650
ApeKI	GCWGC	3 cut(s)	314, 317, 577
ApoI	RAATTY	3 cut(s)	68, 338, 535
AspA2I	CCTAGG	1 cut(s)	653
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	418, 650
AsuHPI	GGTGA	1 cut(s)	134
AvrII	CCTAGG	1 cut(s)	653
BbsI	GAAGAC	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	3 cut(s)	301, 304, 564
BccI	CCATC	2 cut(s)	442, 667
BceAI	ACGGC	1 cut(s)	327
BciT130I	CCWGG	1 cut(s)	422
BclI	TGATCA	1 cut(s)	379
BcoDI	GTCTC	2 cut(s)	114, 506
BfaI	CTAG	2 cut(s)	654, 681
BfmI	CTRYAG	1 cut(s)	578
BglI	GCCNNNNNGGC	1 cut(s)	311
BisI	GCNGC	5 cut(s)	76, 306, 315, 318, 578
BlnI	CCTAGG	1 cut(s)	653
BlsI	GCNGC	5 cut(s)	77, 307, 316, 319, 579
Bme1390I	CCNGG	1 cut(s)	422
BmgT120I	GGNCC	2 cut(s)	418, 650
BmrFI	CCNGG	1 cut(s)	422
BmsI	GCATC	1 cut(s)	667
BpiI	GAAGAC	1 cut(s)	241
BpmI	CTGGAG	2 cut(s)	96, 278
Bpu10I	CCTNAGC	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	506
BsaJI	CCNNGG	3 cut(s)	267, 420, 653
BsaWI	WCCGGW	1 cut(s)	540
Bse3DI	GCAATG	1 cut(s)	693
BseAI	TCCGGA	1 cut(s)	540
BseBI	CCWGG	1 cut(s)	422
BseDI	CCNNGG	3 cut(s)	267, 420, 653
BseGI	GGATG	4 cut(s)	226, 277, 382, 682
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	1 cut(s)	501
BseRI	GAGGAG	2 cut(s)	620, 625
BseXI	GCAGC	3 cut(s)	301, 304, 564
BseYI	CCCAGC	1 cut(s)	647
Bsh1236I	CGCG	2 cut(s)	26, 37
BshFI	GGCC	5 cut(s)	56, 126, 305, 419, 652
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	2 cut(s)	123, 541
BslFI	GGGAC	2 cut(s)	565, 651
BsmAI	GTCTC	2 cut(s)	114, 506
BsmFI	GGGAC	2 cut(s)	565, 651
BsnI	GGCC	5 cut(s)	56, 126, 305, 419, 652
Bso31I	GGTCTC	1 cut(s)	506
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp13I	TCCGGA	1 cut(s)	540
Bsp143I	GATC	3 cut(s)	379, 641, 703
BspACI	CCGC	4 cut(s)	75, 218, 306, 665
BspANI	GGCC	5 cut(s)	56, 126, 305, 419, 652
BspCNI	CTCAG	1 cut(s)	502
BspEI	TCCGGA	1 cut(s)	540
BspFNI	CGCG	2 cut(s)	26, 37
BspMAI	CTGCAG	1 cut(s)	582
BspPI	GGATC	1 cut(s)	711
BspTNI	GGTCTC	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	693
BssECI	CCNNGG	3 cut(s)	267, 420, 653
BssMI	GATC	3 cut(s)	379, 641, 703
BssT1I	CCWWGG	2 cut(s)	267, 653
Bst2UI	CCWGG	1 cut(s)	422
Bst4CI	ACNGT	6 cut(s)	46, 159, 209, 326, 374, 710
BstC8I	GCNNGC	3 cut(s)	264, 401, 405
BstDEI	CTNAG	2 cut(s)	408, 510
BstF5I	GGATG	4 cut(s)	226, 277, 382, 682
BstFNI	CGCG	2 cut(s)	26, 37
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	3 cut(s)	382, 644, 706
BstMAI	GTCTC	2 cut(s)	114, 506
BstMBI	GATC	3 cut(s)	379, 641, 703
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 32, 311, 314
BstNI	CCWGG	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	420
BstSFI	CTRYAG	1 cut(s)	578
BstUI	CGCG	2 cut(s)	26, 37
BstV1I	GCAGC	3 cut(s)	301, 304, 564
BstV2I	GAAGAC	1 cut(s)	241
BsuRI	GGCC	5 cut(s)	56, 126, 305, 419, 652
BtsCI	GGATG	4 cut(s)	226, 277, 382, 682
BtsIMutI	CAGTG	2 cut(s)	42, 706
Cac8I	GCNNGC	3 cut(s)	264, 401, 405
CfoI	GCGC	1 cut(s)	37
Cfr13I	GGNCC	2 cut(s)	418, 650
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	1 cut(s)	586
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	2 cut(s)	408, 510
DpnI	GATC	3 cut(s)	381, 643, 705
DpnII	GATC	3 cut(s)	379, 641, 703
EaeI	YGGCCR	2 cut(s)	54, 124
EciI	GGCGGA	2 cut(s)	233, 680
Eco130I	CCWWGG	2 cut(s)	267, 653
Eco31I	GGTCTC	1 cut(s)	506
Eco57I	CTGAAG	1 cut(s)	408
EcoRI	GAATTC	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	420
EcoT14I	CCWWGG	2 cut(s)	267, 653
ErhI	CCWWGG	2 cut(s)	267, 653
FaeI	CATG	1 cut(s)	589
FaqI	GGGAC	2 cut(s)	565, 651
FatI	CATG	1 cut(s)	585
FauNDI	CATATG	1 cut(s)	363
FbaI	TGATCA	1 cut(s)	379
FblI	GTMKAC	1 cut(s)	181
Fnu4HI	GCNGC	5 cut(s)	76, 306, 315, 318, 578
FokI	GGATG	4 cut(s)	233, 284, 369, 689
Fsp4HI	GCNGC	5 cut(s)	76, 306, 315, 318, 578
FspBI	CTAG	2 cut(s)	654, 681
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	5 cut(s)	76, 306, 315, 318, 578
GsaI	CCCAGC	1 cut(s)	651
GsuI	CTGGAG	2 cut(s)	96, 278
HaeIII	GGCC	5 cut(s)	56, 126, 305, 419, 652
HapII	CCGG	2 cut(s)	123, 541
HhaI	GCGC	1 cut(s)	37
Hin1II	CATG	1 cut(s)	589
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HincII	GTYRAC	1 cut(s)	182
HindII	GTYRAC	1 cut(s)	182
HindIII	AAGCTT	2 cut(s)	117, 401
HinfI	GANTC	4 cut(s)	49, 107, 224, 668
HpaII	CCGG	2 cut(s)	123, 541
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	2 cut(s)	142, 182
Hpy188I	TCNGA	1 cut(s)	430
Hpy188III	TCNNGA	5 cut(s)	104, 113, 257, 386, 541
Hpy8I	GTNNAC	2 cut(s)	142, 182
Hpy99I	CGWCG	2 cut(s)	159, 183
HpyAV	CCTTC	7 cut(s)	110, 176, 295, 349, 527, 558, 583
HpyCH4III	ACNGT	6 cut(s)	46, 159, 209, 326, 374, 710
HpyCH4V	TGCA	2 cut(s)	367, 580
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 32, 311, 314
HpyF3I	CTNAG	2 cut(s)	408, 510
Hsp92II	CATG	1 cut(s)	589
HspAI	GCGC	1 cut(s)	35
Kpn2I	TCCGGA	1 cut(s)	540
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	3 cut(s)	379, 641, 703
LmnI	GCTCC	1 cut(s)	259
Lsp1109I	GCAGC	3 cut(s)	301, 304, 564
LweI	GCATC	1 cut(s)	667
MaeI	CTAG	2 cut(s)	654, 681
MaeIII	GTNAC	1 cut(s)	159
MalI	GATC	3 cut(s)	381, 643, 705
MboI	GATC	3 cut(s)	379, 641, 703
MboII	GAAGA	3 cut(s)	246, 401, 580
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	6 cut(s)	68, 79, 170, 338, 350, 535
MluI	ACGCGT	1 cut(s)	24
MlyI	GAGTC	2 cut(s)	116, 677
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	5 cut(s)	32, 186, 470, 598, 603
MroI	TCCGGA	1 cut(s)	540
MseI	TTAA	3 cut(s)	330, 414, 435
MspA1I	CMGCKG	1 cut(s)	75
MspI	CCGG	2 cut(s)	123, 541
MspR9I	CCNGG	1 cut(s)	422
MvaI	CCWGG	1 cut(s)	422
MvnI	CGCG	2 cut(s)	26, 37
MwoI	GCNNNNNNNGC	4 cut(s)	13, 32, 311, 314
NdeI	CATATG	1 cut(s)	363
NdeII	GATC	3 cut(s)	379, 641, 703
NlaIII	CATG	1 cut(s)	589
NmeAIII	GCCGAG	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	159
PfeI	GAWTC	2 cut(s)	49, 224
PkrI	GCNGC	5 cut(s)	77, 307, 316, 319, 579
PleI	GAGTC	2 cut(s)	115, 676
PpsI	GAGTC	2 cut(s)	115, 676
Psp6I	CCWGG	1 cut(s)	420
PspFI	CCCAGC	1 cut(s)	647
PspGI	CCWGG	1 cut(s)	420
PspPI	GGNCC	2 cut(s)	418, 650
PstI	CTGCAG	1 cut(s)	582
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SalI	GTCGAC	1 cut(s)	180
SaqAI	TTAA	3 cut(s)	330, 414, 435
SatI	GCNGC	5 cut(s)	76, 306, 315, 318, 578
Sau3AI	GATC	3 cut(s)	379, 641, 703
Sau96I	GGNCC	2 cut(s)	418, 650
SchI	GAGTC	2 cut(s)	116, 677
ScrFI	CCNGG	1 cut(s)	422
SduI	GDGCHC	1 cut(s)	63
SfaNI	GCATC	1 cut(s)	667
SfcI	CTRYAG	1 cut(s)	578
Sse9I	AATT	6 cut(s)	68, 79, 170, 338, 350, 535
SsiI	CCGC	4 cut(s)	75, 218, 306, 665
SspMI	CTAG	2 cut(s)	654, 681
StyD4I	CCNGG	1 cut(s)	420
StyI	CCWWGG	2 cut(s)	267, 653
TaaI	ACNGT	6 cut(s)	46, 159, 209, 326, 374, 710
TaqI	TCGA	2 cut(s)	181, 671
TasI	AATT	6 cut(s)	68, 79, 170, 338, 350, 535
TauI	GCSGC	2 cut(s)	78, 308
TfiI	GAWTC	2 cut(s)	49, 224
Tru1I	TTAA	3 cut(s)	330, 414, 435
Tru9I	TTAA	3 cut(s)	330, 414, 435
TscAI	CASTG	2 cut(s)	49, 713
TseFI	GTSAC	1 cut(s)	159
TseI	GCWGC	3 cut(s)	314, 317, 577
Tsp45I	GTSAC	1 cut(s)	159
TspDTI	ATGAA	3 cut(s)	237, 509, 602
TspRI	CASTG	2 cut(s)	49, 713
XapI	RAATTY	3 cut(s)	68, 338, 535
XmaJI	CCTAGG	1 cut(s)	653
XmiI	GTMKAC	1 cut(s)	181
XspI	CTAG	2 cut(s)	654, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.