RchiOBHm_Chr3g0450251

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
N/A
Physical Location & Seq
Forward (+)
1833650 .. 1834741
1092 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 660 bp
ATGCCTTCCGCCTGTCGTTGCTCTCTAAGATGTTCAAGTCAGCGGCGGAATCCGACGCCGTTTGAGACAGGTTCATTCCGCCTGAGACACCCGAGATCCTGTCCAAGTCCGGCGAATCTGGATTATTGGCCGCCAAATCCAAGAAGGAGCTTTACCTCGCTCTCTGCAACAAACGTTTCCTCATCGACGACGGTAAATTGCTTGGTAATTGGTATTATCTGGGGCGATGCTCCCCAGTATTGGAGATGGACTTCTCATCCTGAATCCAGGTTTCAGGAGGTGGCTGAGCTTCTTGATGTTTGCTGGCTTGAAATCAATGGGAAACTTGAAACACGCGTGCTGTCCCCATCGACTCTGTACAAAGCTTACCTTTCGTTCAAGTTTACTCCAGAGGCTTATGGATTTAAACATAAGGTGGCTGGTTTCAGGAGGTGGCTGAGCTTCTTGATGTTTGCTGGCTTGAAATCAATGGGAAACTTGAAACACGCGTGCTGTCCCCATCGACTCTGTACAAAGCTTACCTTTCGTTCAAGTTTACTCCAGAGGCTTATGGATTTAAACATCTGCCTGCGGAGGGGAGAACATAGTAAACAGACTGTGTTTTTCCCCAACGAAGGAGAGATGGACTACTCAGAAGTAGAGATGGACTTCTCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

219

Amino Acids

25.26

Weight (kDa)

9.18

Isoelectric Point (pI)

67.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 71 - 140 9.9e-27 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 336, 488
AciI CCGC 6 cut(s) 9, 43, 46, 79, 131, 571
AclI AACGTT 1 cut(s) 174
AclWI GGATC 1 cut(s) 90
AcoI YGGCCR 1 cut(s) 128
AcyI GRCGYC 1 cut(s) 56
AfaI GTAC 2 cut(s) 359, 511
AfiI CCNNNNNNNGG 3 cut(s) 240, 574, 614
AflIII ACRYGT 2 cut(s) 334, 486
AgsI TTSAA 7 cut(s) 36, 311, 329, 379, 463, 481, 531
AjnI CCWGG 1 cut(s) 266
AluBI AGCT 5 cut(s) 150, 289, 365, 441, 517
AluI AGCT 5 cut(s) 150, 289, 365, 441, 517
Alw26I GTCTC 2 cut(s) 59, 79
AlwI GGATC 1 cut(s) 90
Ama87I CYCGRG 1 cut(s) 91
AoxI GGCC 1 cut(s) 128
AvaI CYCGRG 1 cut(s) 91
BarI GAAGNNNNNNTAC 2 cut(s) 136, 168
BccI CCATC 5 cut(s) 240, 355, 507, 616, 637
BceAI ACGGC 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 268
BcoDI GTCTC 2 cut(s) 59, 79
BisI GCNGC 2 cut(s) 44, 131
BlpI GCTNAGC 2 cut(s) 285, 437
BlsI GCNGC 2 cut(s) 45, 132
Bme1390I CCNGG 1 cut(s) 268
BmeT110I CYCGRG 1 cut(s) 91
BmrFI CCNGG 1 cut(s) 268
BmrI ACTGGG 1 cut(s) 229
BmsI GCATC 1 cut(s) 217
BmuI ACTGGG 1 cut(s) 229
BpmI CTGGAG 2 cut(s) 372, 524
Bpu1102I GCTNAGC 2 cut(s) 285, 437
BsaHI GRCGYC 1 cut(s) 56
Bsc4I CCNNNNNNNGG 3 cut(s) 240, 574, 614
Bse1I ACTGG 1 cut(s) 235
BseBI CCWGG 1 cut(s) 268
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 3 cut(s) 240, 574, 614
BseMII CTCAG 4 cut(s) 74, 276, 428, 645
BseNI ACTGG 1 cut(s) 235
Bsh1236I CGCG 2 cut(s) 336, 488
BshFI GGCC 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 91
BsiSI CCGG 1 cut(s) 110
BslFI GGGAC 2 cut(s) 328, 480
BslI CCNNNNNNNGG 3 cut(s) 240, 574, 614
BsmAI GTCTC 2 cut(s) 59, 79
BsmFI GGGAC 2 cut(s) 328, 480
BsnI GGCC 1 cut(s) 130
BsoBI CYCGRG 1 cut(s) 91
Bsp1407I TGTACA 2 cut(s) 357, 509
Bsp143I GATC 1 cut(s) 95
Bsp1720I GCTNAGC 2 cut(s) 285, 437
BspACI CCGC 6 cut(s) 9, 43, 46, 79, 131, 571
BspANI GGCC 1 cut(s) 130
BspCNI CTCAG 4 cut(s) 75, 277, 429, 644
BspFNI CGCG 2 cut(s) 336, 488
BspPI GGATC 1 cut(s) 90
BsrGI TGTACA 2 cut(s) 357, 509
BsrI ACTGG 1 cut(s) 235
BssMI GATC 1 cut(s) 95
BssNI GRCGYC 1 cut(s) 56
Bst2UI CCWGG 1 cut(s) 268
Bst4CI ACNGT 2 cut(s) 193, 598
BstACI GRCGYC 1 cut(s) 56
BstAUI TGTACA 2 cut(s) 357, 509
BstC8I GCNNGC 5 cut(s) 305, 338, 457, 490, 569
BstDEI CTNAG 6 cut(s) 26, 83, 285, 437, 631, 652
BstF5I GGATG 1 cut(s) 256
BstFNI CGCG 2 cut(s) 336, 488
BstKTI GATC 1 cut(s) 98
BstMAI GTCTC 2 cut(s) 59, 79
BstMBI GATC 1 cut(s) 95
BstNI CCWGG 1 cut(s) 268
BstSCI CCNGG 1 cut(s) 266
BstUI CGCG 2 cut(s) 336, 488
BstX2I RGATCY 1 cut(s) 95
BstYI RGATCY 1 cut(s) 95
BsuRI GGCC 1 cut(s) 130
BtgZI GCGATG 1 cut(s) 240
BtsCI GGATG 1 cut(s) 256
Cac8I GCNNGC 5 cut(s) 305, 338, 457, 490, 569
CseI GACGC 1 cut(s) 64
Csp6I GTAC 2 cut(s) 358, 510
CviQI GTAC 2 cut(s) 358, 510
DdeI CTNAG 6 cut(s) 26, 83, 285, 437, 631, 652
DpnI GATC 1 cut(s) 97
DpnII GATC 1 cut(s) 95
DraI TTTAAA 2 cut(s) 406, 558
EaeI YGGCCR 1 cut(s) 128
EciI GGCGGA 2 cut(s) 61, 68
Eco88I CYCGRG 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 266
FaiI YATR 4 cut(s) 399, 411, 551, 585
FalI AAGNNNNNCTT 4 cut(s) 354, 386, 506, 538
FaqI GGGAC 2 cut(s) 328, 480
Fnu4HI GCNGC 2 cut(s) 44, 131
FokI GGATG 1 cut(s) 243
Fsp4HI GCNGC 2 cut(s) 44, 131
GluI GCNGC 2 cut(s) 44, 131
GsuI CTGGAG 2 cut(s) 372, 524
HaeIII GGCC 1 cut(s) 130
HapII CCGG 1 cut(s) 110
HgaI GACGC 1 cut(s) 64
Hin1I GRCGYC 1 cut(s) 56
HindIII AAGCTT 2 cut(s) 363, 515
HinfI GANTC 5 cut(s) 49, 115, 263, 352, 504
HpaII CCGG 1 cut(s) 110
Hpy166II GTNNAC 3 cut(s) 384, 536, 590
Hpy188I TCNGA 3 cut(s) 54, 634, 655
Hpy188III TCNNGA 8 cut(s) 119, 260, 275, 293, 389, 427, 445, 541
Hpy8I GTNNAC 3 cut(s) 384, 536, 590
Hpy99I CGWCG 3 cut(s) 58, 190, 193
HpyAV CCTTC 3 cut(s) 15, 138, 608
HpyCH4III ACNGT 2 cut(s) 193, 598
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 1 cut(s) 167
HpyF3I CTNAG 6 cut(s) 26, 83, 285, 437, 631, 652
HpySE526I ACGT 1 cut(s) 174
Hsp92I GRCGYC 1 cut(s) 56
Kzo9I GATC 1 cut(s) 95
LmnI GCTCC 2 cut(s) 147, 235
LweI GCATC 1 cut(s) 217
MaeII ACGT 1 cut(s) 174
MalI GATC 1 cut(s) 97
MboI GATC 1 cut(s) 95
MflI RGATCY 1 cut(s) 95
MluCI AATT 2 cut(s) 196, 207
MluI ACGCGT 2 cut(s) 334, 486
MlyI GAGTC 2 cut(s) 346, 498
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 7 cut(s) 166, 190, 271, 385, 423, 537, 567
MseI TTAA 2 cut(s) 405, 557
MspA1I CMGCKG 1 cut(s) 43
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 268
MvaI CCWGG 1 cut(s) 268
MvnI CGCG 2 cut(s) 336, 488
NdeII GATC 1 cut(s) 95
PfeI GAWTC 3 cut(s) 49, 115, 263
PkrI GCNGC 2 cut(s) 45, 132
PleI GAGTC 2 cut(s) 346, 498
PpsI GAGTC 2 cut(s) 346, 498
Psp1406I AACGTT 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
PsuI RGATCY 1 cut(s) 95
RsaI GTAC 2 cut(s) 359, 511
RsaNI GTAC 2 cut(s) 358, 510
SaqAI TTAA 2 cut(s) 405, 557
SatI GCNGC 2 cut(s) 44, 131
Sau3AI GATC 1 cut(s) 95
SchI GAGTC 2 cut(s) 346, 498
ScrFI CCNGG 1 cut(s) 268
SfaNI GCATC 1 cut(s) 217
Sse9I AATT 2 cut(s) 196, 207
SsiI CCGC 6 cut(s) 9, 43, 46, 79, 131, 571
StyD4I CCNGG 1 cut(s) 266
TaaI ACNGT 2 cut(s) 193, 598
TaiI ACGT 1 cut(s) 177
TaqI TCGA 3 cut(s) 185, 350, 502
TasI AATT 2 cut(s) 196, 207
TatI WGTACW 2 cut(s) 357, 509
TauI GCSGC 2 cut(s) 46, 133
TfiI GAWTC 3 cut(s) 49, 115, 263
Tru1I TTAA 2 cut(s) 405, 557
Tru9I TTAA 2 cut(s) 405, 557
TspDTI ATGAA 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.