RchiOBHm_Chr3g0450321

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
N/A
Physical Location & Seq
Reverse (-)
1891192 .. 1892536
1345 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 366 bp
ATGTTGCTCAAGGAAATGGGATATAATGATAATCAACCGGATGCATTGAGTTACTCTGTTGGTTACATCTCCAGTGGGCATTTCAATCCCGCTATCACTATTGATTTTCCATGTACAGCCTTTGATAGAAAATTTCTAAATAGAGGGCTTAGAGGCACTGTGAAGGAGAGATTGAGAGCAATACTAAGACGTTACAGAGGAGGTTTTGAATTCAAAAAAGAAGGATCTCAGCAGAGAAAAGCTGCCCATAAATGTGTATTATTTTTAAAGGGGATTGTGCTCACTTTACCAGCAATGGCAACAACCATGCCTAATCTTACTCCGGGAAGTATTTGTGTTATCGCTTGTACTGTTAGGGATCTATAG

Protein Analysis

121

Amino Acids

13.53

Weight (kDa)

9.78

Isoelectric Point (pI)

33.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 90
AclWI GGATC 1 cut(s) 232
AcsI RAATTY 2 cut(s) 131, 209
AfaI GTAC 2 cut(s) 115, 349
AgsI TTSAA 3 cut(s) 85, 209, 214
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Alw21I GWGCWC 1 cut(s) 282
AlwI GGATC 1 cut(s) 232
ApeKI GCWGC 1 cut(s) 242
ApoI RAATTY 2 cut(s) 131, 209
AsuC2I CCSGG 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 229
BcnI CCSGG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 362
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 324
BmsI GCATC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 55
BpuMI CCSGG 1 cut(s) 324
BsaWI WCCGGW 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 300
BseGI GGATG 1 cut(s) 46
BseMI GCAATG 1 cut(s) 300
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 1 cut(s) 213
BseXI GCAGC 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 282
BsiSI CCGG 2 cut(s) 38, 323
Bsp1286I GDGCHC 1 cut(s) 282
Bsp1407I TGTACA 1 cut(s) 113
Bsp143I GATC 2 cut(s) 224, 358
BspACI CCGC 1 cut(s) 90
BspCNI CTCAG 1 cut(s) 241
BspPI GGATC 1 cut(s) 232
BsrDI GCAATG 1 cut(s) 300
BsrGI TGTACA 1 cut(s) 113
BsrI ACTGG 1 cut(s) 72
BssMI GATC 2 cut(s) 224, 358
Bst4CI ACNGT 2 cut(s) 160, 352
BstAUI TGTACA 1 cut(s) 113
BstDEI CTNAG 3 cut(s) 149, 185, 228
BstF5I GGATG 1 cut(s) 46
BstKTI GATC 2 cut(s) 227, 361
BstMBI GATC 2 cut(s) 224, 358
BstSCI CCNGG 1 cut(s) 322
BstSFI CTRYAG 1 cut(s) 362
BstV1I GCAGC 1 cut(s) 229
BstX2I RGATCY 2 cut(s) 224, 358
BstYI RGATCY 2 cut(s) 224, 358
BtsCI GGATG 1 cut(s) 46
BtsIMutI CAGTG 2 cut(s) 79, 156
Csp6I GTAC 2 cut(s) 114, 348
CviAII CATG 2 cut(s) 111, 307
CviJI RGCY 3 cut(s) 119, 148, 242
CviKI_1 RGCY 3 cut(s) 119, 148, 242
CviQI GTAC 2 cut(s) 114, 348
DdeI CTNAG 3 cut(s) 149, 185, 228
DpnI GATC 2 cut(s) 226, 360
DpnII GATC 2 cut(s) 224, 358
DraI TTTAAA 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 209
EcoT22I ATGCAT 1 cut(s) 46
FaeI CATG 2 cut(s) 114, 310
FaiI YATR 5 cut(s) 24, 112, 249, 308, 364
FatI CATG 2 cut(s) 110, 306
FauI CCCGC 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 243
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 243
GluI GCNGC 1 cut(s) 243
GsuI CTGGAG 1 cut(s) 55
HapII CCGG 2 cut(s) 38, 323
Hin1II CATG 2 cut(s) 114, 310
HpaII CCGG 2 cut(s) 38, 323
HpyAV CCTTC 2 cut(s) 157, 215
HpyCH4III ACNGT 2 cut(s) 160, 352
HpyCH4IV ACGT 1 cut(s) 190
HpyCH4V TGCA 1 cut(s) 44
HpyF3I CTNAG 3 cut(s) 149, 185, 228
HpySE526I ACGT 1 cut(s) 190
Hsp92II CATG 2 cut(s) 114, 310
Kzo9I GATC 2 cut(s) 224, 358
LpnPI CCDG 4 cut(s) 51, 85, 303, 336
Lsp1109I GCAGC 1 cut(s) 229
LweI GCATC 1 cut(s) 31
MaeII ACGT 1 cut(s) 190
MaeIII GTNAC 3 cut(s) 50, 62, 191
MalI GATC 2 cut(s) 226, 360
MboI GATC 2 cut(s) 224, 358
MflI RGATCY 2 cut(s) 224, 358
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 2 cut(s) 131, 209
MnlI CCTC 4 cut(s) 137, 146, 191, 194
Mph1103I ATGCAT 1 cut(s) 46
MseI TTAA 1 cut(s) 266
MslI CAYNNNNRTG 1 cut(s) 252
MspI CCGG 2 cut(s) 38, 323
MspR9I CCNGG 1 cut(s) 324
NciI CCSGG 1 cut(s) 324
NdeII GATC 2 cut(s) 224, 358
NlaIII CATG 2 cut(s) 114, 310
NsiI ATGCAT 1 cut(s) 46
PfoI TCCNGGA 1 cut(s) 322
PkrI GCNGC 1 cut(s) 244
PsuI RGATCY 2 cut(s) 224, 358
RsaI GTAC 2 cut(s) 115, 349
RsaNI GTAC 2 cut(s) 114, 348
RseI CAYNNNNRTG 1 cut(s) 252
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 2 cut(s) 224, 358
ScrFI CCNGG 1 cut(s) 324
SduI GDGCHC 1 cut(s) 282
SetI ASST 3 cut(s) 193, 205, 244
SfaNI GCATC 1 cut(s) 31
SfcI CTRYAG 1 cut(s) 362
SmiMI CAYNNNNRTG 1 cut(s) 252
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 2 cut(s) 131, 209
SsiI CCGC 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 322
TaaI ACNGT 2 cut(s) 160, 352
TaiI ACGT 1 cut(s) 193
TasI AATT 2 cut(s) 131, 209
TatI WGTACW 2 cut(s) 113, 347
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TscAI CASTG 2 cut(s) 79, 163
TseI GCWGC 1 cut(s) 242
TspRI CASTG 2 cut(s) 79, 163
XapI RAATTY 2 cut(s) 131, 209
Zsp2I ATGCAT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.