Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1986033 .. 1986880

Gene Structure 848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGGGGGGGTGGGTATTCTGTTTGTATATGTTTTATGGTGGGAGGAATTACACCATTTAGTGCATCAAGAGTTTGGTAGAATGCCTTCATACATGCTTATACAGTTTTTCTGCATTAAGAAAAAACAAAGAAAGAAAGAACAGATCTGTAGCCAAAACTTCTGTCAAAATTTCATGGTCGAGGCTGGAGCACCACAACAGCCACAAGCTACTGCCCCTGTGGATCAGGGTTATAATTCATATCCAGCTCATGGTTCTGTGTATGCATCTCCCCCATCCAACCAAGGTCACCAAGGCCATACTGGCGGCTATGGCTCAGTCTATGGCCAACACTATGGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009909 GO:0009911 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0097159 GO:1901363 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

114

Amino Acids

12.9

Weight (kDa)

7.78

Isoelectric Point (pI)

44.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	234
AccB7I	CCANNNNNTGG	1 cut(s)	251
AciI	CCGC	1 cut(s)	306
AclWI	GGATC	1 cut(s)	231
AcoI	YGGCCR	1 cut(s)	325
AcsI	RAATTY	1 cut(s)	169
AfiI	CCNNNNNNNGG	1 cut(s)	251
AluBI	AGCT	2 cut(s)	209, 248
AluI	AGCT	2 cut(s)	209, 248
Alw21I	GWGCWC	1 cut(s)	193
AlwI	GGATC	1 cut(s)	231
AoxI	GGCC	2 cut(s)	295, 325
ApoI	RAATTY	1 cut(s)	169
ArsI	GACNNNNNNTTYG	2 cut(s)	148, 180
Asp700I	GAANNNNTTC	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	281
BalI	TGGCCA	1 cut(s)	327
BarI	GAAGNNNNNNTAC	2 cut(s)	70, 102
Bbv12I	GWGCWC	1 cut(s)	193
BccI	CCATC	1 cut(s)	283
BfaI	CTAG	1 cut(s)	343
BfmI	CTRYAG	1 cut(s)	148
BglI	GCCNNNNNGGC	1 cut(s)	303
BglII	AGATCT	1 cut(s)	144
BisI	GCNGC	1 cut(s)	307
BlsI	GCNGC	1 cut(s)	308
BmsI	GCATC	2 cut(s)	73, 275
BpmI	CTGGAG	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	283, 292
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	307
BseDI	CCNNGG	2 cut(s)	283, 292
BseGI	GGATG	1 cut(s)	275
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	1 cut(s)	307
BshFI	GGCC	2 cut(s)	297, 327
BsiHKAI	GWGCWC	1 cut(s)	193
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmI	GAATGC	1 cut(s)	87
BsnI	GGCC	2 cut(s)	297, 327
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	144, 223
BspACI	CCGC	1 cut(s)	306
BspANI	GGCC	2 cut(s)	297, 327
BspCNI	CTCAG	1 cut(s)	329
BspPI	GGATC	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	307
BssECI	CCNNGG	2 cut(s)	283, 292
BssMI	GATC	2 cut(s)	144, 223
BssT1I	CCWWGG	2 cut(s)	283, 292
Bst4CI	ACNGT	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	316
BstEII	GGTNACC	1 cut(s)	287
BstF5I	GGATG	1 cut(s)	275
BstKTI	GATC	2 cut(s)	147, 226
BstMBI	GATC	2 cut(s)	144, 223
BstMWI	GCNNNNNNNGC	2 cut(s)	303, 312
BstNSI	RCATGY	1 cut(s)	97
BstPI	GGTNACC	1 cut(s)	287
BstSFI	CTRYAG	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	144
BstXI	CCANNNNNNTGG	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	144
BsuRI	GGCC	2 cut(s)	297, 327
BtsCI	GGATG	1 cut(s)	275
CviAII	CATG	3 cut(s)	94, 175, 251
CviJI	RGCY	9 cut(s)	153, 185, 202, 209, 248, 297, 309, 315, 327
CviKI_1	RGCY	9 cut(s)	153, 185, 202, 209, 248, 297, 309, 315, 327
DdeI	CTNAG	1 cut(s)	316
DpnI	GATC	2 cut(s)	146, 225
DpnII	GATC	2 cut(s)	144, 223
EaeI	YGGCCR	1 cut(s)	325
Eco130I	CCWWGG	2 cut(s)	283, 292
Eco91I	GGTNACC	1 cut(s)	287
EcoO65I	GGTNACC	1 cut(s)	287
EcoT14I	CCWWGG	2 cut(s)	283, 292
EcoT22I	ATGCAT	1 cut(s)	268
ErhI	CCWWGG	2 cut(s)	283, 292
FaeI	CATG	3 cut(s)	97, 178, 254
FatI	CATG	3 cut(s)	93, 174, 250
Fnu4HI	GCNGC	1 cut(s)	307
FokI	GGATG	1 cut(s)	262
Fsp4HI	GCNGC	1 cut(s)	307
FspBI	CTAG	1 cut(s)	343
GluI	GCNGC	1 cut(s)	307
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	297, 327
Hin1II	CATG	3 cut(s)	97, 178, 254
HphI	GGTGA	1 cut(s)	281
Hpy188III	TCNNGA	1 cut(s)	68
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	1 cut(s)	105
HpyCH4V	TGCA	3 cut(s)	64, 114, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	303, 312
HpyF3I	CTNAG	1 cut(s)	316
Hsp92II	CATG	3 cut(s)	97, 178, 254
Kzo9I	GATC	2 cut(s)	144, 223
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	5 cut(s)	171, 212, 231, 258, 288
LweI	GCATC	2 cut(s)	73, 275
MaeI	CTAG	1 cut(s)	343
MaeIII	GTNAC	2 cut(s)	287, 338
MalI	GATC	2 cut(s)	146, 225
MboI	GATC	2 cut(s)	144, 223
MflI	RGATCY	1 cut(s)	144
MhlI	GDGCHC	1 cut(s)	193
MlsI	TGGCCA	1 cut(s)	327
MluCI	AATT	3 cut(s)	47, 169, 235
MluNI	TGGCCA	1 cut(s)	327
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	2 cut(s)	37, 175
Mox20I	TGGCCA	1 cut(s)	327
Mph1103I	ATGCAT	1 cut(s)	268
MroXI	GAANNNNTTC	1 cut(s)	85
MscI	TGGCCA	1 cut(s)	327
MseI	TTAA	1 cut(s)	117
Msp20I	TGGCCA	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	87
MwoI	GCNNNNNNNGC	2 cut(s)	303, 312
NdeII	GATC	2 cut(s)	144, 223
NlaIII	CATG	3 cut(s)	97, 178, 254
NmuCI	GTSAC	1 cut(s)	287
NsiI	ATGCAT	1 cut(s)	268
NspI	RCATGY	1 cut(s)	97
PctI	GAATGC	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	85
PflMI	CCANNNNNTGG	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	308
PsiI	TTATAA	1 cut(s)	234
PspEI	GGTNACC	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	1 cut(s)	307
Sau3AI	GATC	2 cut(s)	144, 223
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	3 cut(s)	211, 250, 289
SfaNI	GCATC	2 cut(s)	73, 275
SfcI	CTRYAG	1 cut(s)	148
Sse9I	AATT	3 cut(s)	47, 169, 235
SsiI	CCGC	1 cut(s)	306
SspMI	CTAG	1 cut(s)	343
StyI	CCWWGG	2 cut(s)	283, 292
TaaI	ACNGT	1 cut(s)	105
TaqI	TCGA	1 cut(s)	180
TasI	AATT	3 cut(s)	47, 169, 235
TauI	GCSGC	1 cut(s)	309
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	287
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	3 cut(s)	78, 163, 228
Van91I	CCANNNNNTGG	1 cut(s)	251
XapI	RAATTY	1 cut(s)	169
XceI	RCATGY	1 cut(s)	97
XcmI	CCANNNNNNNNNTGG	1 cut(s)	299
XmnI	GAANNNNTTC	1 cut(s)	85
XspI	CTAG	1 cut(s)	343
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.