RchiOBHm_Chr3g0450791

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
N/A
Physical Location & Seq
Reverse (-)
2178307 .. 2178596
290 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 177 bp
ATGAGGATCAGCCCTTCATGGCTCAACAGATATGGATGGACTGCCTTCTGCAGACCCAATGGCCCTAGCAGAGCAGACGCTTGCGGAAAATGCCTACTGGTGACGAACATTGGGACTGGAGCTCAGGAAACAGTAAGAAACATCGATCAATGCAGCAATGGATGTGAATGTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Barwin

Protein Analysis

58

Amino Acids

6.32

Weight (kDa)

8.3

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Barwin PF00967 6 - 54 1.6e-17 Barwin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 84
AclWI GGATC 1 cut(s) 14
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
Alw21I GWGCWC 1 cut(s) 124
AlwI GGATC 1 cut(s) 14
AoxI GGCC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 112
BanII GRGCYC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 1 cut(s) 165
BccI CCATC 1 cut(s) 30
BfaI CTAG 1 cut(s) 66
BfmI CTRYAG 1 cut(s) 49
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 62
BpmI CTGGAG 1 cut(s) 138
Bpu10I CCTNAGC 1 cut(s) 123
Bsa29I ATCGAT 1 cut(s) 144
Bse1I ACTGG 2 cut(s) 102, 121
Bse3DI GCAATG 1 cut(s) 163
BseCI ATCGAT 1 cut(s) 144
BseGI GGATG 2 cut(s) 41, 167
BseMI GCAATG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 137
BseNI ACTGG 2 cut(s) 102, 121
BseXI GCAGC 1 cut(s) 165
BshFI GGCC 1 cut(s) 63
BshVI ATCGAT 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 124
BslFI GGGAC 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 2 cut(s) 6, 145
BspACI CCGC 1 cut(s) 84
BspANI GGCC 1 cut(s) 63
BspCNI CTCAG 1 cut(s) 136
BspDI ATCGAT 1 cut(s) 144
BspMAI CTGCAG 1 cut(s) 53
BspPI GGATC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 163
BsrI ACTGG 2 cut(s) 102, 121
BssMI GATC 2 cut(s) 6, 145
Bst4CI ACNGT 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 2 cut(s) 41, 167
BstKTI GATC 2 cut(s) 9, 148
BstMBI GATC 2 cut(s) 6, 145
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstSFI CTRYAG 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 165
Bsu15I ATCGAT 1 cut(s) 144
BsuRI GGCC 1 cut(s) 63
BsuTUI ATCGAT 1 cut(s) 144
BtsCI GGATG 2 cut(s) 41, 167
Cac8I GCNNGC 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 62
ClaI ATCGAT 1 cut(s) 144
CseI GACGC 1 cut(s) 86
CviAII CATG 1 cut(s) 18
CviJI RGCY 4 cut(s) 12, 22, 63, 122
CviKI_1 RGCY 4 cut(s) 12, 22, 63, 122
DdeI CTNAG 1 cut(s) 123
DpnI GATC 2 cut(s) 8, 147
DpnII GATC 2 cut(s) 6, 145
Ecl136II GAGCTC 1 cut(s) 122
Eco24I GRGCYC 1 cut(s) 124
Eco53kI GAGCTC 1 cut(s) 122
EcoICRI GAGCTC 1 cut(s) 122
EcoT38I GRGCYC 1 cut(s) 124
FaeI CATG 1 cut(s) 21
FaiI YATR 2 cut(s) 19, 33
FaqI GGGAC 1 cut(s) 127
FatI CATG 1 cut(s) 17
Fnu4HI GCNGC 1 cut(s) 154
FokI GGATG 1 cut(s) 48
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 1 cut(s) 154
FspBI CTAG 1 cut(s) 66
GluI GCNGC 1 cut(s) 154
GsuI CTGGAG 1 cut(s) 138
HaeIII GGCC 1 cut(s) 63
HgaI GACGC 1 cut(s) 86
Hin1II CATG 1 cut(s) 21
HphI GGTGA 1 cut(s) 112
Hpy188III TCNNGA 1 cut(s) 125
HpyAV CCTTC 2 cut(s) 24, 55
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4V TGCA 2 cut(s) 51, 153
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 1 cut(s) 123
Hsp92II CATG 1 cut(s) 21
Kzo9I GATC 2 cut(s) 6, 145
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 3 cut(s) 83, 102, 110
Lsp1109I GCAGC 1 cut(s) 165
MaeI CTAG 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 100
MalI GATC 2 cut(s) 8, 147
MboI GATC 2 cut(s) 6, 145
MhlI GDGCHC 1 cut(s) 124
MseI TTAA 1 cut(s) 175
MwoI GCNNNNNNNGC 1 cut(s) 90
NdeII GATC 2 cut(s) 6, 145
NlaIII CATG 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 100
PkrI GCNGC 1 cut(s) 155
Psp124BI GAGCTC 1 cut(s) 124
PspPI GGNCC 1 cut(s) 62
PstI CTGCAG 1 cut(s) 53
SacI GAGCTC 1 cut(s) 124
SaqAI TTAA 1 cut(s) 175
SatI GCNGC 1 cut(s) 154
Sau3AI GATC 2 cut(s) 6, 145
Sau96I GGNCC 1 cut(s) 62
SduI GDGCHC 1 cut(s) 124
SetI ASST 1 cut(s) 124
SfcI CTRYAG 1 cut(s) 49
SgeI CNNG 6 cut(s) 30, 78, 93, 110, 129, 137
SsiI CCGC 1 cut(s) 84
SspMI CTAG 1 cut(s) 66
SstI GAGCTC 1 cut(s) 124
TaaI ACNGT 1 cut(s) 133
TaqI TCGA 1 cut(s) 144
Tru1I TTAA 1 cut(s) 175
Tru9I TTAA 1 cut(s) 175
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 1 cut(s) 153
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 1 cut(s) 6
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.