RchiOBHm_Chr3g0454471

Mevalonate

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
N/A
Physical Location & Seq
Forward (+)
4609935 .. 4611646
1712 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 348 bp
ATGGGACTCTGGTCTTGGGTCATCTGCTGCACTTTGTGTTGCATTCTCTGGTGCTCTTCTTGCTTACTCAGATTGTGTGAGTCTGGATTTCAGCCACCAAGGGCGGTTAGATTTTGGGCGAAAGCGAACTTGACTTGCTCAATAAATGAGCATTTGAAGGTGAAAAAATCATCCATGGAAAGCCATCTGGAATTGACAACTCAGTCAGCACATATGGTAAGGAATATGATCAAGTTTAGATCAGGCAGTTTGACACGCCTCAAATCAAACATGCCACTCAAAATGCTCATTACTAACACAAAAGTTGGGAGGAACACAAAGGTGCTGGTGTTACAGAGAGGACATTAA

Protein Analysis

115

Amino Acids

13.14

Weight (kDa)

10.02

Isoelectric Point (pI)

39.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 202
AciI CCGC 1 cut(s) 104
AdeI CACNNNGTG 1 cut(s) 36
AgsI TTSAA 1 cut(s) 157
AleI CACNNNNGTG 1 cut(s) 320
Alw21I GWGCWC 1 cut(s) 56
ApeKI GCWGC 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 172
Bbv12I GWGCWC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 14
BccI CCATC 1 cut(s) 192
BclI TGATCA 1 cut(s) 228
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
BoxI GACNNNNGTC 1 cut(s) 10
BsaJI CCNNGG 2 cut(s) 98, 174
BseDI CCNNGG 2 cut(s) 98, 174
BseGI GGATG 1 cut(s) 170
BseMII CTCAG 2 cut(s) 82, 215
BseXI GCAGC 1 cut(s) 14
BsgI GTGCAG 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 56
BslFI GGGAC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 2 cut(s) 228, 239
Bsp19I CCATGG 1 cut(s) 174
BspACI CCGC 1 cut(s) 104
BspCNI CTCAG 2 cut(s) 81, 214
BspQI GCTCTTC 1 cut(s) 61
BssECI CCNNGG 2 cut(s) 98, 174
BssMI GATC 2 cut(s) 228, 239
BssT1I CCWWGG 2 cut(s) 98, 174
Bst6I CTCTTC 1 cut(s) 61
BstDEI CTNAG 2 cut(s) 68, 201
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 170
BstKTI GATC 2 cut(s) 231, 242
BstMBI GATC 2 cut(s) 228, 239
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstNSI RCATGY 1 cut(s) 274
BstPAI GACNNNNGTC 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 14
BtgI CCRYGG 1 cut(s) 174
BtsCI GGATG 1 cut(s) 170
CviAII CATG 2 cut(s) 175, 271
CviJI RGCY 2 cut(s) 94, 183
CviKI_1 RGCY 2 cut(s) 94, 183
DdeI CTNAG 2 cut(s) 68, 201
DpnI GATC 2 cut(s) 230, 241
DpnII GATC 2 cut(s) 228, 239
DraIII CACNNNGTG 1 cut(s) 36
DrdI GACNNNNNNGTC 1 cut(s) 202
DseDI GACNNNNNNGTC 1 cut(s) 202
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
Eco130I CCWWGG 2 cut(s) 98, 174
EcoT14I CCWWGG 2 cut(s) 98, 174
ErhI CCWWGG 2 cut(s) 98, 174
FaeI CATG 2 cut(s) 178, 274
FaiI YATR 5 cut(s) 176, 213, 215, 227, 272
FaqI GGGAC 1 cut(s) 18
FatI CATG 2 cut(s) 174, 270
FauNDI CATATG 1 cut(s) 213
FbaI TGATCA 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 28
FokI GGATG 1 cut(s) 157
Fsp4HI GCNGC 1 cut(s) 28
GluI GCNGC 1 cut(s) 28
Hin1II CATG 2 cut(s) 178, 274
HinfI GANTC 2 cut(s) 6, 80
HphI GGTGA 1 cut(s) 172
Hpy188I TCNGA 1 cut(s) 71
Hpy188III TCNNGA 2 cut(s) 84, 188
HpyAV CCTTC 1 cut(s) 151
HpyCH4V TGCA 2 cut(s) 30, 42
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
HpyF3I CTNAG 2 cut(s) 68, 201
Hsp92II CATG 2 cut(s) 178, 274
Ksp22I TGATCA 1 cut(s) 228
Kzo9I GATC 2 cut(s) 228, 239
LguI GCTCTTC 1 cut(s) 61
LpnPI CCDG 5 cut(s) 34, 69, 173, 228, 311
Lsp1109I GCAGC 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 330
MalI GATC 2 cut(s) 230, 241
MboI GATC 2 cut(s) 228, 239
MboII GAAGA 1 cut(s) 48
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 1 cut(s) 191
MlyI GAGTC 1 cut(s) 89
MnlI CCTC 3 cut(s) 269, 303, 332
MseI TTAA 1 cut(s) 346
MslI CAYNNNNRTG 1 cut(s) 320
Mva1269I GAATGC 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 60
NcoI CCATGG 1 cut(s) 174
NdeI CATATG 1 cut(s) 213
NdeII GATC 2 cut(s) 228, 239
NlaIII CATG 2 cut(s) 178, 274
NspI RCATGY 1 cut(s) 274
OliI CACNNNNGTG 1 cut(s) 320
PciSI GCTCTTC 1 cut(s) 61
PctI GAATGC 1 cut(s) 42
PkrI GCNGC 1 cut(s) 29
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PshAI GACNNNNGTC 1 cut(s) 10
RseI CAYNNNNRTG 1 cut(s) 320
SapI GCTCTTC 1 cut(s) 61
SaqAI TTAA 1 cut(s) 346
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 2 cut(s) 228, 239
SchI GAGTC 1 cut(s) 89
SduI GDGCHC 1 cut(s) 56
SetI ASST 2 cut(s) 162, 324
SmiMI CAYNNNNRTG 1 cut(s) 320
Sse9I AATT 1 cut(s) 191
SsiI CCGC 1 cut(s) 104
StyI CCWWGG 2 cut(s) 98, 174
TasI AATT 1 cut(s) 191
Tru1I TTAA 1 cut(s) 346
Tru9I TTAA 1 cut(s) 346
TseI GCWGC 1 cut(s) 27
XceI RCATGY 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.