Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6778587 .. 6779498

Gene Structure 912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGCGGGTTCGATTTATCCTATATCGGCGATACTGCACAAGTACTGCAATTTTCTCTAATTCTCATATTTCTAGGTACGCTCGGCTTGGTCAAATCGAGAATGCCCGAAAGGTGTTCGATGAAATGCCTGAGAGAACTACCGTCTCCTGGAACTCAATGATTGCGGGGTATTTTCAAAACAATCAACCCGGAGAAGCCCGAAAAATGTTTGATAGAATGCAACTCAGGAACTTGGTTACTTGGAACGGTTTGATATCCGGGTATATCAAGAATGGGATGGTTAGTGAGGCCCGGAAAGTGTTTGATTCAATGCCGGAGAGAAATGTTGTTTCGTGGACTTCGATGGTTAGAGGGTATGTGCAACAGGGCAAAATTTCGGAAGCTGAGTCGCTTTTTTGGCAGATGCCTGGAAAGAATGTTTTTTCGTGGACGGTGATGTTGGGGGGACTGATTCAAGATGGCCGGGTTGATGAGGCTCGGAGGTTTTATGATTTGATGCCGGAGAAGGATGTCGTGGCAAGGAATAATATGATTGGTGGGTATTTTCAGGCAGGCCGCTTGGCTGAAGCGCGTGAGATTTTCGATGAGATGCCACACAGGAATGTTGTTACTTGGACTACGATGATATCTGGGTATGTACAGAACCAACGGGTGGATGTTGCTAGGAAGCTTTTTGAAGTGATGCCAGAGAAGAATGAGGTTTTGTGGATGGTGATGCTGATGGGGTACACTCAGTGTGGACGGATCACAGAGGCTTCTGAGCTGTATCGTGCAATGCCAGTTAAGTCAGTTGTTGCTTGTACCACAATGATACTTGGGTATGGCCACAATGGGGAGGTAGAAGAAGCAAGGCAGGTTTTTGAAAATATGAGAGAGAAAGATGATCAAGTCATCAAACAAGGAGTGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

303

Amino Acids

35.14

Weight (kDa)

9.05

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	46 - 77	4.2e-07	PPR repeat family
PPR	PF01535	48 - 77	5.4e-08	PPR repeat
PPR_2	PF13041	77 - 109	4.4e-08	PPR repeat family
PPR_1	PF12854	77 - 104	8.2e-07	PPR repeat
PPR	PF01535	79 - 109	2.9e-09	PPR repeat
PPR	PF01535	110 - 140	2.1e-07	PPR repeat
PPR_2	PF13041	169 - 202	1.5e-06	PPR repeat family
PPR	PF01535	175 - 201	8.2e-06	PPR repeat
PPR_2	PF13041	200 - 232	1.2e-07	PPR repeat family
PPR_1	PF12854	200 - 228	1.1e-06	PPR repeat
PPR	PF01535	203 - 232	6.3e-07	PPR repeat
PPR_2	PF13041	263 - 293	2.5e-06	PPR repeat family
PPR	PF01535	265 - 293	1.3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	844
AccB7I	CCANNNNNTGG	1 cut(s)	652
AccII	CGCG	1 cut(s)	571
AciI	CCGC	3 cut(s)	4, 164, 556
AclWI	GGATC	1 cut(s)	752
AcoI	YGGCCR	2 cut(s)	460, 823
AcsI	RAATTY	1 cut(s)	372
AcuI	CTGAAG	1 cut(s)	585
AdeI	CACNNNGTG	1 cut(s)	735
AfaI	GTAC	5 cut(s)	43, 77, 639, 728, 802
AfiI	CCNNNNNNNGG	3 cut(s)	147, 652, 832
AgsI	TTSAA	5 cut(s)	176, 309, 455, 677, 863
AjnI	CCWGG	2 cut(s)	146, 406
AluBI	AGCT	3 cut(s)	383, 670, 763
AluI	AGCT	3 cut(s)	383, 670, 763
Alw26I	GTCTC	1 cut(s)	148
AlwI	GGATC	1 cut(s)	752
AoxI	GGCC	4 cut(s)	288, 460, 553, 823
ApoI	RAATTY	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	571
AspS9I	GGNCC	1 cut(s)	289
AsuC2I	CCSGG	4 cut(s)	189, 259, 292, 464
AsuHPI	GGTGA	2 cut(s)	445, 724
BaeI	ACNNNNGTAYC	2 cut(s)	803, 836
BalI	TGGCCA	1 cut(s)	825
BccI	CCATC	5 cut(s)	271, 337, 452, 703, 715
BciT130I	CCWGG	2 cut(s)	148, 408
BclI	TGATCA	1 cut(s)	883
BcnI	CCSGG	4 cut(s)	189, 259, 292, 464
BcoDI	GTCTC	1 cut(s)	148
BfaI	CTAG	2 cut(s)	72, 663
BfuAI	ACCTGC	1 cut(s)	844
BisI	GCNGC	1 cut(s)	556
BlsI	GCNGC	1 cut(s)	557
BmcAI	AGTACT	1 cut(s)	43
Bme1390I	CCNGG	6 cut(s)	148, 189, 259, 292, 408, 464
BmgT120I	GGNCC	1 cut(s)	289
BmrFI	CCNGG	6 cut(s)	148, 189, 259, 292, 408, 464
BmsI	GCATC	5 cut(s)	393, 486, 579, 672, 705
BpuMI	CCSGG	4 cut(s)	189, 259, 292, 464
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 652, 832
Bse1I	ACTGG	1 cut(s)	779
Bse3DI	GCAATG	1 cut(s)	780
BseBI	CCWGG	2 cut(s)	148, 408
BseGI	GGATG	4 cut(s)	282, 514, 661, 714
BseLI	CCNNNNNNNGG	3 cut(s)	147, 652, 832
BseMI	GCAATG	1 cut(s)	780
BseMII	CTCAG	5 cut(s)	120, 238, 375, 746, 750
BseNI	ACTGG	1 cut(s)	779
BsgI	GTGCAG	1 cut(s)	19
Bsh1236I	CGCG	1 cut(s)	571
BshFI	GGCC	4 cut(s)	290, 462, 555, 825
BsiSI	CCGG	6 cut(s)	189, 258, 292, 314, 463, 500
BslFI	GGGAC	1 cut(s)	459
BslI	CCNNNNNNNGG	3 cut(s)	147, 652, 832
BsmAI	GTCTC	1 cut(s)	148
BsmBI	CGTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	459
BsmI	GAATGC	2 cut(s)	106, 222
BsnI	GGCC	4 cut(s)	290, 462, 555, 825
Bsp1407I	TGTACA	1 cut(s)	637
Bsp143I	GATC	2 cut(s)	744, 883
BspACI	CCGC	3 cut(s)	4, 164, 556
BspANI	GGCC	4 cut(s)	290, 462, 555, 825
BspCNI	CTCAG	5 cut(s)	121, 237, 376, 745, 751
BspFNI	CGCG	1 cut(s)	571
BspMI	ACCTGC	1 cut(s)	844
BspPI	GGATC	1 cut(s)	752
BsrDI	GCAATG	1 cut(s)	780
BsrGI	TGTACA	1 cut(s)	637
BsrI	ACTGG	1 cut(s)	779
BssMI	GATC	2 cut(s)	744, 883
Bst2UI	CCWGG	2 cut(s)	148, 408
Bst4CI	ACNGT	3 cut(s)	142, 248, 433
BstAUI	TGTACA	1 cut(s)	637
BstC8I	GCNNGC	1 cut(s)	553
BstDEI	CTNAG	5 cut(s)	129, 224, 384, 732, 759
BstF5I	GGATG	4 cut(s)	282, 514, 661, 714
BstFNI	CGCG	1 cut(s)	571
BstHHI	GCGC	1 cut(s)	571
BstKTI	GATC	2 cut(s)	747, 886
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	2 cut(s)	744, 883
BstMWI	GCNNNNNNNGC	1 cut(s)	397
BstNI	CCWGG	2 cut(s)	148, 408
BstSCI	CCNGG	6 cut(s)	146, 187, 257, 290, 406, 462
BstUI	CGCG	1 cut(s)	571
BsuRI	GGCC	4 cut(s)	290, 462, 555, 825
BtsCI	GGATG	4 cut(s)	282, 514, 661, 714
BtsIMutI	CAGTG	1 cut(s)	740
BveI	ACCTGC	1 cut(s)	844
Cac8I	GCNNGC	1 cut(s)	553
CfoI	GCGC	1 cut(s)	571
Cfr13I	GGNCC	1 cut(s)	289
Csp6I	GTAC	5 cut(s)	42, 76, 638, 727, 801
CviQI	GTAC	5 cut(s)	42, 76, 638, 727, 801
DdeI	CTNAG	5 cut(s)	129, 224, 384, 732, 759
DpnI	GATC	2 cut(s)	746, 885
DpnII	GATC	2 cut(s)	744, 883
DraIII	CACNNNGTG	1 cut(s)	735
EaeI	YGGCCR	2 cut(s)	460, 823
Eco32I	GATATC	2 cut(s)	255, 627
Eco57I	CTGAAG	1 cut(s)	585
EcoRII	CCWGG	2 cut(s)	146, 406
EcoRV	GATATC	2 cut(s)	255, 627
Esp3I	CGTCTC	1 cut(s)	148
FaiI	YATR	9 cut(s)	22, 66, 264, 357, 489, 530, 636, 822, 869
FaqI	GGGAC	1 cut(s)	459
FauI	CCCGC	1 cut(s)	157
FbaI	TGATCA	1 cut(s)	883
Fnu4HI	GCNGC	1 cut(s)	556
FokI	GGATG	4 cut(s)	289, 521, 668, 721
Fsp4HI	GCNGC	1 cut(s)	556
FspBI	CTAG	2 cut(s)	72, 663
GlaI	GCGC	1 cut(s)	570
GluI	GCNGC	1 cut(s)	556
HaeIII	GGCC	4 cut(s)	290, 462, 555, 825
HapII	CCGG	6 cut(s)	189, 258, 292, 314, 463, 500
HhaI	GCGC	1 cut(s)	571
Hin6I	GCGC	1 cut(s)	569
HinP1I	GCGC	1 cut(s)	569
HindIII	AAGCTT	1 cut(s)	668
HinfI	GANTC	3 cut(s)	305, 386, 451
HpaII	CCGG	6 cut(s)	189, 258, 292, 314, 463, 500
HphI	GGTGA	2 cut(s)	445, 724
Hpy166II	GTNNAC	4 cut(s)	336, 429, 729, 740
Hpy188I	TCNGA	3 cut(s)	379, 480, 760
Hpy188III	TCNNGA	4 cut(s)	97, 226, 268, 455
Hpy8I	GTNNAC	4 cut(s)	336, 429, 729, 740
HpyAV	CCTTC	1 cut(s)	499
HpyCH4III	ACNGT	3 cut(s)	142, 248, 433
HpyCH4V	TGCA	5 cut(s)	36, 47, 220, 361, 773
HpyF10VI	GCNNNNNNNGC	1 cut(s)	397
HpyF3I	CTNAG	5 cut(s)	129, 224, 384, 732, 759
HspAI	GCGC	1 cut(s)	569
Ksp22I	TGATCA	1 cut(s)	883
Kzo9I	GATC	2 cut(s)	744, 883
LweI	GCATC	5 cut(s)	393, 486, 579, 672, 705
MaeI	CTAG	2 cut(s)	72, 663
MaeIII	GTNAC	2 cut(s)	235, 607
MalI	GATC	2 cut(s)	746, 885
MboI	GATC	2 cut(s)	744, 883
MboII	GAAGA	2 cut(s)	703, 854
MlsI	TGGCCA	1 cut(s)	825
MluCI	AATT	3 cut(s)	48, 58, 372
MluNI	TGGCCA	1 cut(s)	825
MlyI	GAGTC	1 cut(s)	395
MnlI	CCTC	7 cut(s)	280, 344, 466, 474, 691, 745, 829
Mox20I	TGGCCA	1 cut(s)	825
MscI	TGGCCA	1 cut(s)	825
MseI	TTAA	1 cut(s)	783
MslI	CAYNNNNRTG	1 cut(s)	600
Msp20I	TGGCCA	1 cut(s)	825
MspI	CCGG	6 cut(s)	189, 258, 292, 314, 463, 500
MspR9I	CCNGG	6 cut(s)	148, 189, 259, 292, 408, 464
Mva1269I	GAATGC	2 cut(s)	106, 222
MvaI	CCWGG	2 cut(s)	148, 408
MvnI	CGCG	1 cut(s)	571
MwoI	GCNNNNNNNGC	1 cut(s)	397
NciI	CCSGG	4 cut(s)	189, 259, 292, 464
NdeII	GATC	2 cut(s)	744, 883
NmeAIII	GCCGAG	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	1 cut(s)	338
PctI	GAATGC	2 cut(s)	106, 222
PfeI	GAWTC	2 cut(s)	305, 451
PflMI	CCANNNNNTGG	1 cut(s)	652
PfoI	TCCNGGA	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	557
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
Psp6I	CCWGG	2 cut(s)	146, 406
PspGI	CCWGG	2 cut(s)	146, 406
PspPI	GGNCC	1 cut(s)	289
RsaI	GTAC	5 cut(s)	43, 77, 639, 728, 802
RsaNI	GTAC	5 cut(s)	42, 76, 638, 727, 801
RseI	CAYNNNNRTG	1 cut(s)	600
SaqAI	TTAA	1 cut(s)	783
SatI	GCNGC	1 cut(s)	556
Sau3AI	GATC	2 cut(s)	744, 883
Sau96I	GGNCC	1 cut(s)	289
ScaI	AGTACT	1 cut(s)	43
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	6 cut(s)	148, 189, 259, 292, 408, 464
SetI	ASST	9 cut(s)	77, 114, 385, 485, 672, 702, 765, 840, 858
SfaNI	GCATC	5 cut(s)	393, 486, 579, 672, 705
SmiMI	CAYNNNNRTG	1 cut(s)	600
Sse9I	AATT	3 cut(s)	48, 58, 372
SsiI	CCGC	3 cut(s)	4, 164, 556
SspMI	CTAG	2 cut(s)	72, 663
StyD4I	CCNGG	6 cut(s)	146, 187, 257, 290, 406, 462
TaaI	ACNGT	3 cut(s)	142, 248, 433
TaqI	TCGA	5 cut(s)	10, 96, 117, 341, 582
TasI	AATT	3 cut(s)	48, 58, 372
TatI	WGTACW	2 cut(s)	41, 637
TauI	GCSGC	1 cut(s)	558
TfiI	GAWTC	2 cut(s)	305, 451
Tru1I	TTAA	1 cut(s)	783
Tru9I	TTAA	1 cut(s)	783
TscAI	CASTG	1 cut(s)	740
TspDTI	ATGAA	1 cut(s)	135
TspGWI	ACGGA	1 cut(s)	757
TspRI	CASTG	1 cut(s)	740
Van91I	CCANNNNNTGG	1 cut(s)	652
XapI	RAATTY	1 cut(s)	372
XspI	CTAG	2 cut(s)	72, 663
ZrmI	AGTACT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.