Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6779956 .. 6780377

Gene Structure 422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGTTGATCTGCTTGGTCGAGCAGGCCAGGTAAAAGAGGCAATGGATTTAATAGAGAAAATGCCGGTGGAAGCAGATGCCATTGTTTGGGGTGCCTTATTAGGTGCATGCAGAACGCATATGAAGTTGGATTTGGCGGAAGTTGCGGGAAAGAAACTTATACAGCTAGAGCCCCACAATGCAGGACATTATGTCTTGCTATCAAATATGTATGCATCCAAAGGTAGATGGCATGAGGTTGCAGACCTGAGGAAAATGATGGAGCCAGAAATATTACCAAGTCACCTGGCTGTAGCTGGATTGAGGTGGAACATAAAGTACATATGTTTACTTGGGGAGAGACCACAGGCCACCCAGAGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

121

Amino Acids

13.5

Weight (kDa)

6.96

Isoelectric Point (pI)

64.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	40 - 88	6.2e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AccB7I	CCANNNNNTGG	1 cut(s)	87
AciI	CCGC	2 cut(s)	137, 146
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	87
AhdI	GACNNNNNGTC	1 cut(s)	191
AjnI	CCWGG	2 cut(s)	27, 285
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	2 cut(s)	166, 296
AluI	AGCT	2 cut(s)	166, 296
Alw26I	GTCTC	1 cut(s)	334
AoxI	GGCC	2 cut(s)	25, 348
AsuHPI	GGTGA	1 cut(s)	275
AxyI	CCTNAGG	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	174
BccI	CCATC	2 cut(s)	222, 253
BciT130I	CCWGG	2 cut(s)	29, 287
BcoDI	GTCTC	1 cut(s)	334
BfaI	CTAG	1 cut(s)	167
BfmI	CTRYAG	1 cut(s)	291
Bme1390I	CCNGG	2 cut(s)	29, 287
BmeRI	GACNNNNNGTC	1 cut(s)	191
BmiI	GGNNCC	2 cut(s)	94, 264
BmrFI	CCNGG	2 cut(s)	29, 287
BmsI	GCATC	2 cut(s)	67, 224
BsaI	GGTCTC	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse118I	RCCGGY	1 cut(s)	64
Bse21I	CCTNAGG	1 cut(s)	248
Bse3DI	GCAATG	1 cut(s)	48
BseBI	CCWGG	2 cut(s)	29, 287
BseGI	GGATG	1 cut(s)	215
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	239
BshFI	GGCC	2 cut(s)	27, 350
BshNI	GGYRCC	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	334
BsnI	GGCC	2 cut(s)	27, 350
Bso31I	GGTCTC	1 cut(s)	334
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	7
BspACI	CCGC	2 cut(s)	137, 146
BspANI	GGCC	2 cut(s)	27, 350
BspCNI	CTCAG	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	94, 264
BspT107I	GGYRCC	1 cut(s)	92
BspTNI	GGTCTC	1 cut(s)	334
BsrDI	GCAATG	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	64
BssMI	GATC	1 cut(s)	7
Bst2UI	CCWGG	2 cut(s)	29, 287
BstC8I	GCNNGC	2 cut(s)	25, 109
BstDEI	CTNAG	1 cut(s)	248
BstF5I	GGATG	1 cut(s)	215
BstKTI	GATC	1 cut(s)	10
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	2 cut(s)	29, 287
BstNSI	RCATGY	2 cut(s)	111, 364
BstSCI	CCNGG	2 cut(s)	27, 285
BstSFI	CTRYAG	1 cut(s)	291
Bsu36I	CCTNAGG	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	27, 350
BtsCI	GGATG	1 cut(s)	215
Cac8I	GCNNGC	2 cut(s)	25, 109
Cfr10I	RCCGGY	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	3 cut(s)	108, 233, 361
CviJI	RGCY	7 cut(s)	27, 166, 172, 265, 290, 296, 350
CviKI_1	RGCY	7 cut(s)	27, 166, 172, 265, 290, 296, 350
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	1 cut(s)	248
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
DriI	GACNNNNNGTC	1 cut(s)	191
Eam1105I	GACNNNNNGTC	1 cut(s)	191
EciI	GGCGGA	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	334
Eco81I	CCTNAGG	1 cut(s)	248
EcoRII	CCWGG	2 cut(s)	27, 285
EcoT22I	ATGCAT	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	3 cut(s)	111, 236, 364
FatI	CATG	3 cut(s)	107, 232, 360
FauI	CCCGC	1 cut(s)	139
FauNDI	CATATG	2 cut(s)	120, 323
FokI	GGATG	1 cut(s)	202
FriOI	GRGCYC	1 cut(s)	174
FspBI	CTAG	1 cut(s)	167
HaeIII	GGCC	2 cut(s)	27, 350
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	3 cut(s)	111, 236, 364
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	329
Hpy8I	GTNNAC	1 cut(s)	329
HpyCH4V	TGCA	5 cut(s)	107, 111, 182, 215, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	1 cut(s)	248
Hsp92II	CATG	3 cut(s)	111, 236, 364
Kzo9I	GATC	1 cut(s)	7
LmnI	GCTCC	1 cut(s)	262
LweI	GCATC	2 cut(s)	67, 224
MaeI	CTAG	1 cut(s)	167
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	174
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	4 cut(s)	31, 229, 243, 297
Mph1103I	ATGCAT	1 cut(s)	217
MseI	TTAA	1 cut(s)	50
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	2 cut(s)	29, 287
MvaI	CCWGG	2 cut(s)	29, 287
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeI	CATATG	2 cut(s)	120, 323
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	3 cut(s)	111, 236, 364
NlaIV	GGNNCC	2 cut(s)	94, 264
NmuCI	GTSAC	1 cut(s)	281
NsiI	ATGCAT	1 cut(s)	217
NspI	RCATGY	2 cut(s)	111, 364
PaeI	GCATGC	1 cut(s)	111
PflMI	CCANNNNNTGG	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	27, 285
PspGI	CCWGG	2 cut(s)	27, 285
PspN4I	GGNNCC	2 cut(s)	94, 264
PsrI	GAACNNNNNNTAC	2 cut(s)	302, 334
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SaqAI	TTAA	1 cut(s)	50
Sau3AI	GATC	1 cut(s)	7
ScrFI	CCNGG	2 cut(s)	29, 287
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	9 cut(s)	33, 106, 168, 226, 240, 249, 288, 298, 308
SfaNI	GCATC	2 cut(s)	67, 224
SfcI	CTRYAG	1 cut(s)	291
SphI	GCATGC	1 cut(s)	111
SsiI	CCGC	2 cut(s)	137, 146
SspI	AATATT	1 cut(s)	273
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	2 cut(s)	27, 285
TaqI	TCGA	1 cut(s)	19
TatI	WGTACW	1 cut(s)	318
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TseFI	GTSAC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	137
Van91I	CCANNNNNTGG	1 cut(s)	87
XceI	RCATGY	2 cut(s)	111, 364
XspI	CTAG	1 cut(s)	167
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.