RchiOBHm_Chr3g0458121

branched-chain-amino-acid aminotransferase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
N/A
Physical Location & Seq
Reverse (-)
6924695 .. 6925918
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 495 bp
ATGCTCTTTCTTAAAAAGGGACTTTATTGGAAGCTATTCAGTAAAGCATATATTTTTTCTCTCTCTAATGGCAACACGTTGGGACTGGAACCATTCAACTTAGTGGTTGAAAATGAAGTCCATCGTGCAGTTCGTGGTGGAGCTGGAAGTGTTAATACCATAGGGAATTATGCTTTGGTTTTGAAGACACAGGTGGAGGCAAAAGCAGATGGTTTCTCTGATGTTTTGTACCTTGATTCTGTTCACAAAAGATATGTGGAACAGACTTCCACCGCTAACATCTTTCTAGTGAAGCACTGTTTATATGACAATAAAATGACGGTTTTGCTCTCGAGCTGTGTATCTGGAGAGGAAAAGGCCCGAGTTCTCTATTGTGTTCTAGAAGCCTACATTGAGTGTAGCCAGATACAAACACTTCGTTCTATTTTCGGTTTTGTTCTCGGATACAGACGCGGCCTGAAGAGAAGTTCTCCAGTTATGGTATTGAAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

164

Amino Acids

18.41

Weight (kDa)

9.28

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 453
AciI CCGC 2 cut(s) 273, 453
AcuI CTGAAG 1 cut(s) 479
AfaI GTAC 1 cut(s) 230
AflIII ACRYGT 1 cut(s) 75
AgsI TTSAA 4 cut(s) 97, 110, 184, 487
AjuI GAANNNNNNNTTGG 2 cut(s) 158, 190
AluBI AGCT 3 cut(s) 34, 143, 336
AluI AGCT 3 cut(s) 34, 143, 336
Ama87I CYCGRG 2 cut(s) 331, 360
AoxI GGCC 2 cut(s) 357, 454
Asp700I GAANNNNTTC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 358
AvaI CYCGRG 2 cut(s) 331, 360
BarI GAAGNNNNNNTAC 2 cut(s) 139, 171
BbsI GAAGAC 1 cut(s) 191
BccI CCATC 2 cut(s) 129, 203
BciVI GTATCC 1 cut(s) 437
BfaI CTAG 2 cut(s) 287, 380
BfuI GTATCC 1 cut(s) 437
BisI GCNGC 1 cut(s) 454
BlsI GCNGC 1 cut(s) 455
BmeT110I CYCGRG 2 cut(s) 331, 360
BmgT120I GGNCC 1 cut(s) 358
BmiI GGNNCC 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 191
BplI GAGNNNNNCTC 2 cut(s) 454, 486
BpmI CTGGAG 2 cut(s) 366, 456
Bse1I ACTGG 2 cut(s) 90, 473
BseNI ACTGG 2 cut(s) 90, 473
BsgI GTGCAG 1 cut(s) 147
Bsh1236I CGCG 1 cut(s) 453
BshFI GGCC 2 cut(s) 359, 456
BsiHKCI CYCGRG 2 cut(s) 331, 360
BslFI GGGAC 2 cut(s) 33, 96
BsmFI GGGAC 2 cut(s) 33, 96
BsnI GGCC 2 cut(s) 359, 456
BsoBI CYCGRG 2 cut(s) 331, 360
BspACI CCGC 2 cut(s) 273, 453
BspANI GGCC 2 cut(s) 359, 456
BspFNI CGCG 1 cut(s) 453
BspLI GGNNCC 1 cut(s) 90
BsrI ACTGG 2 cut(s) 90, 473
Bst4CI ACNGT 2 cut(s) 299, 322
Bst6I CTCTTC 1 cut(s) 455
BstDEI CTNAG 1 cut(s) 100
BstFNI CGCG 1 cut(s) 453
BstUI CGCG 1 cut(s) 453
BstV2I GAAGAC 1 cut(s) 191
BsuI GTATCC 1 cut(s) 437
BsuRI GGCC 2 cut(s) 359, 456
BtsIMutI CAGTG 1 cut(s) 295
Cfr13I GGNCC 1 cut(s) 358
CseI GACGC 1 cut(s) 459
Csp6I GTAC 1 cut(s) 229
CviJI RGCY 7 cut(s) 34, 143, 336, 359, 386, 402, 456
CviKI_1 RGCY 7 cut(s) 34, 143, 336, 359, 386, 402, 456
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 455
EarI CTCTTC 1 cut(s) 455
Eco57I CTGAAG 1 cut(s) 479
Eco88I CYCGRG 2 cut(s) 331, 360
FaiI YATR 8 cut(s) 49, 51, 161, 171, 255, 304, 306, 479
FaqI GGGAC 2 cut(s) 33, 96
Fnu4HI GCNGC 1 cut(s) 454
Fsp4HI GCNGC 1 cut(s) 454
FspBI CTAG 2 cut(s) 287, 380
GluI GCNGC 1 cut(s) 454
GsuI CTGGAG 2 cut(s) 366, 456
HaeIII GGCC 2 cut(s) 359, 456
HgaI GACGC 1 cut(s) 459
HinfI GANTC 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 2 cut(s) 220, 443
Hpy188III TCNNGA 3 cut(s) 331, 345, 380
Hpy8I GTNNAC 1 cut(s) 244
HpyCH4III ACNGT 2 cut(s) 299, 322
HpyCH4IV ACGT 1 cut(s) 77
HpyCH4V TGCA 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 100
HpySE526I ACGT 1 cut(s) 77
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 7 cut(s) 71, 129, 176, 330, 416, 470, 486
MaeI CTAG 2 cut(s) 287, 380
MaeII ACGT 1 cut(s) 77
MboII GAAGA 2 cut(s) 196, 472
MluCI AATT 1 cut(s) 166
MnlI CCTC 2 cut(s) 190, 343
MroXI GAANNNNTTC 1 cut(s) 35
MseI TTAA 2 cut(s) 12, 153
MvnI CGCG 1 cut(s) 453
NlaIV GGNNCC 1 cut(s) 90
PaeR7I CTCGAG 1 cut(s) 331
PcsI WCGNNNNNNNCGW 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 35
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 455
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 1 cut(s) 358
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
SaqAI TTAA 2 cut(s) 12, 153
SatI GCNGC 1 cut(s) 454
Sau96I GGNCC 1 cut(s) 358
SetI ASST 6 cut(s) 36, 80, 145, 195, 234, 338
Sfr274I CTCGAG 1 cut(s) 331
SlaI CTCGAG 1 cut(s) 331
SmlI CTYRAG 1 cut(s) 331
SmoI CTYRAG 1 cut(s) 331
Sse9I AATT 1 cut(s) 166
SsiI CCGC 2 cut(s) 273, 453
SspMI CTAG 2 cut(s) 287, 380
TaaI ACNGT 2 cut(s) 299, 322
TaiI ACGT 1 cut(s) 80
TaqI TCGA 1 cut(s) 332
TasI AATT 1 cut(s) 166
TauI GCSGC 1 cut(s) 456
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 2 cut(s) 12, 153
Tru9I TTAA 2 cut(s) 12, 153
TscAI CASTG 1 cut(s) 302
TspDTI ATGAA 1 cut(s) 129
TspRI CASTG 1 cut(s) 302
XbaI TCTAGA 1 cut(s) 379
XhoI CTCGAG 1 cut(s) 331
XmnI GAANNNNTTC 1 cut(s) 35
XspI CTAG 2 cut(s) 287, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.