RchiOBHm_Chr3g0458601

Belongs to the actin-binding proteins ADF family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
N/A
Physical Location & Seq
Reverse (-)
7231932 .. 7232461
530 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 378 bp
ATGCAACATCTGGTATCGCTGTGCACAAAGAGTGCAATTTTCAAGATTGAGGAGGAGCAAAAGCAAGTTATTGTGGAAGCAACTGGTGATCCAACAGAAACATATGAGGCTTTCACAGATAGTTTTCCTACTTATGAATGTTGTTATGCTGTTTTCAATTTCGATCTTCCTATACCAGAGGGCGTCCCAAAAAGGCAGATATTGTTTATTGCCTTGTCGCTTGATACATCAAGGGAGGGAAACAAGAAGATCTATGCAAGCGCGATCGACAGTTTCAAGAGAGAGCTTGATGGGATTCAAATCGAGTTGGAGGAAATTAGTCCATCTGATATCTACCTTAATGTAATTAGGAACTGTGTTTCTAAACATGAACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

125

Amino Acids

14.21

Weight (kDa)

4.63

Isoelectric Point (pI)

58.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cofilin_ADF PF00241 9 - 118 3.8e-17 Cofilin/tropomyosin-type actin-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 263
AclWI GGATC 1 cut(s) 83
AcyI GRCGYC 1 cut(s) 183
AgsI TTSAA 4 cut(s) 43, 157, 277, 299
AluBI AGCT 1 cut(s) 286
AluI AGCT 1 cut(s) 286
Alw21I GWGCWC 1 cut(s) 26
Alw44I GTGCAC 1 cut(s) 22
AlwI GGATC 1 cut(s) 83
ApaLI GTGCAC 1 cut(s) 22
AspLEI GCGC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 98
BaeGI GKGCMC 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 26
BccI CCATC 2 cut(s) 284, 331
BglII AGATCT 1 cut(s) 249
BsaBI GATNNNNATC 1 cut(s) 299
BsaHI GRCGYC 1 cut(s) 183
Bse1I ACTGG 1 cut(s) 88
Bse8I GATNNNNATC 1 cut(s) 299
BseJI GATNNNNATC 1 cut(s) 299
BseNI ACTGG 1 cut(s) 88
BseRI GAGGAG 2 cut(s) 65, 68
BseSI GKGCMC 1 cut(s) 26
Bsh1236I CGCG 1 cut(s) 263
Bsh1285I CGRYCG 1 cut(s) 267
BsiEI CGRYCG 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 26
BslFI GGGAC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 4 cut(s) 88, 163, 249, 264
BspFNI CGCG 1 cut(s) 263
BspPI GGATC 1 cut(s) 83
BsrI ACTGG 1 cut(s) 88
BssMI GATC 4 cut(s) 88, 163, 249, 264
BssNI GRCGYC 1 cut(s) 183
Bst4CI ACNGT 2 cut(s) 272, 356
BstACI GRCGYC 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 259
BstFNI CGCG 1 cut(s) 263
BstHHI GCGC 1 cut(s) 263
BstKTI GATC 4 cut(s) 91, 166, 252, 267
BstMBI GATC 4 cut(s) 88, 163, 249, 264
BstMCI CGRYCG 1 cut(s) 267
BstSLI GKGCMC 1 cut(s) 26
BstUI CGCG 1 cut(s) 263
BstX2I RGATCY 1 cut(s) 249
BstYI RGATCY 1 cut(s) 249
Cac8I GCNNGC 1 cut(s) 259
CfoI GCGC 1 cut(s) 263
CseI GACGC 1 cut(s) 172
CviAII CATG 1 cut(s) 368
CviJI RGCY 2 cut(s) 110, 286
CviKI_1 RGCY 2 cut(s) 110, 286
DpnI GATC 4 cut(s) 90, 165, 251, 266
DpnII GATC 4 cut(s) 88, 163, 249, 264
Eco32I GATATC 1 cut(s) 331
EcoRV GATATC 1 cut(s) 331
FaeI CATG 1 cut(s) 371
FaiI YATR 8 cut(s) 103, 105, 135, 147, 173, 255, 369, 376
FaqI GGGAC 1 cut(s) 170
FatI CATG 1 cut(s) 367
FauNDI CATATG 1 cut(s) 103
GlaI GCGC 1 cut(s) 262
HgaI GACGC 1 cut(s) 172
HhaI GCGC 1 cut(s) 263
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 1 cut(s) 371
Hin6I GCGC 1 cut(s) 261
HinP1I GCGC 1 cut(s) 261
HinfI GANTC 1 cut(s) 295
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 24
Hpy188I TCNGA 1 cut(s) 328
Hpy188III TCNNGA 2 cut(s) 43, 277
Hpy8I GTNNAC 1 cut(s) 24
HpyCH4III ACNGT 2 cut(s) 272, 356
HpyCH4V TGCA 4 cut(s) 4, 24, 35, 257
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 1 cut(s) 371
HspAI GCGC 1 cut(s) 261
Kzo9I GATC 4 cut(s) 88, 163, 249, 264
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 2 cut(s) 69, 189
MalI GATC 4 cut(s) 90, 165, 251, 266
MboI GATC 4 cut(s) 88, 163, 249, 264
MboII GAAGA 2 cut(s) 158, 259
MflI RGATCY 1 cut(s) 249
MhlI GDGCHC 1 cut(s) 26
MluCI AATT 4 cut(s) 36, 157, 315, 345
MmeI TCCRAC 2 cut(s) 116, 288
MnlI CCTC 6 cut(s) 43, 46, 100, 172, 229, 304
MseI TTAA 1 cut(s) 339
MvnI CGCG 1 cut(s) 263
NdeI CATATG 1 cut(s) 103
NdeII GATC 4 cut(s) 88, 163, 249, 264
NlaIII CATG 1 cut(s) 371
PfeI GAWTC 1 cut(s) 295
Ple19I CGATCG 1 cut(s) 267
PsuI RGATCY 1 cut(s) 249
PvuI CGATCG 1 cut(s) 267
SaqAI TTAA 1 cut(s) 339
Sau3AI GATC 4 cut(s) 88, 163, 249, 264
SduI GDGCHC 1 cut(s) 26
SetI ASST 2 cut(s) 288, 339
Sse9I AATT 4 cut(s) 36, 157, 315, 345
TaaI ACNGT 2 cut(s) 272, 356
TaqI TCGA 3 cut(s) 162, 267, 303
TasI AATT 4 cut(s) 36, 157, 315, 345
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TspDTI ATGAA 1 cut(s) 150
VneI GTGCAC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.