Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7455335 .. 7456912

Gene Structure 1578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGATGAGCTCCAAGTTCAGATTCAAACCTGGAATTAAGCACTATGGGTGTCAGGTGGATCTATTTGGTCGAGCTGGGAAGCTCGAGAAGGCGCTTCATGTCACTACCACAAATATGCCTTATAGATACCATTTTTTCCCCACTTTTGCAAGAATGGTGGCAGCACACAACAAAACAAGTCTCATCAAGGAAGGTGAAGGAGGAAGAAACTCAATCCATTGCTCTCTCTGCGACCGGTTCTTTCACCAGACTTCCGACCAACCCCAAAAAAATGTCTCCGGGTGTCGTCAAGGAGGAGCTTGTCGGAGAGGTCATGTCCACCTAAAATCCCTCAAGAATGGCCTTCAGAACAAGGAAGAAGATGAAGTCGTGTTGTTTCATCTAACATATATAGTTGCAAATTCAGTCATTCACTCTTTTAGTGCTGGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

144

Amino Acids

16.23

Weight (kDa)

9.68

Isoelectric Point (pI)

33.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	400
AcuI	CTGAAG	1 cut(s)	329
AgeI	ACCGGT	1 cut(s)	234
AgsI	TTSAA	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AluBI	AGCT	4 cut(s)	9, 74, 82, 299
AluI	AGCT	4 cut(s)	9, 74, 82, 299
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	2 cut(s)	185, 280
AlwI	GGATC	1 cut(s)	66
Ama87I	CYCGRG	1 cut(s)	83
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	1 cut(s)	400
AsiGI	ACCGGT	1 cut(s)	234
AspLEI	GCGC	1 cut(s)	94
AsuC2I	CCSGG	1 cut(s)	280
AsuHPI	GGTGA	2 cut(s)	206, 236
AvaI	CYCGRG	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	30
BcnI	CCSGG	1 cut(s)	280
BcoDI	GTCTC	2 cut(s)	185, 280
BfoI	RGCGCY	1 cut(s)	95
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	2 cut(s)	30, 280
BmeT110I	CYCGRG	1 cut(s)	83
BmrFI	CCNGG	2 cut(s)	30, 280
BpuEI	CTTGAG	1 cut(s)	317
BpuMI	CCSGG	1 cut(s)	280
BsaWI	WCCGGW	1 cut(s)	234
Bse118I	RCCGGY	1 cut(s)	234
Bse3DI	GCAATG	1 cut(s)	217
BseBI	CCWGG	1 cut(s)	30
BseMI	GCAATG	1 cut(s)	217
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	173
BseYI	CCCAGC	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	342
BshTI	ACCGGT	1 cut(s)	234
BsiEI	CGRYCG	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	83
BsiSI	CCGG	2 cut(s)	235, 279
BsmAI	GTCTC	2 cut(s)	185, 280
BsnI	GGCC	1 cut(s)	342
BsoBI	CYCGRG	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	58
BspANI	GGCC	1 cut(s)	342
BspPI	GGATC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	217
BsrFI	RCCGGY	1 cut(s)	234
BssAI	RCCGGY	1 cut(s)	234
BssMI	GATC	1 cut(s)	58
Bst2UI	CCWGG	1 cut(s)	30
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	1 cut(s)	61
BstMAI	GTCTC	2 cut(s)	185, 280
BstMBI	GATC	1 cut(s)	58
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	1 cut(s)	228
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	2 cut(s)	28, 278
BstV1I	GCAGC	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	342
CfoI	GCGC	1 cut(s)	94
Cfr10I	RCCGGY	1 cut(s)	234
CspAI	ACCGGT	1 cut(s)	234
CspCI	CAANNNNNGTGG	2 cut(s)	138, 173
CviAII	CATG	3 cut(s)	98, 314, 432
CviJI	RGCY	5 cut(s)	9, 74, 82, 299, 342
CviKI_1	RGCY	5 cut(s)	9, 74, 82, 299, 342
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
Ecl136II	GAGCTC	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	11
Eco53kI	GAGCTC	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	329
Eco88I	CYCGRG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	11
FaeI	CATG	3 cut(s)	101, 317, 435
FaiI	YATR	9 cut(s)	45, 99, 116, 123, 315, 388, 390, 392, 433
FatI	CATG	3 cut(s)	97, 313, 431
Fnu4HI	GCNGC	1 cut(s)	162
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	1 cut(s)	162
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	162
GsaI	CCCAGC	1 cut(s)	78
HaeII	RGCGCY	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	2 cut(s)	235, 279
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	3 cut(s)	101, 317, 435
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HinfI	GANTC	1 cut(s)	21
HpaII	CCGG	2 cut(s)	235, 279
HphI	GGTGA	2 cut(s)	206, 236
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	4 cut(s)	20, 256, 306, 348
Hpy188III	TCNNGA	2 cut(s)	85, 334
Hpy8I	GTNNAC	1 cut(s)	319
HpyAV	CCTTC	4 cut(s)	82, 185, 191, 353
HpyCH4V	TGCA	2 cut(s)	149, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	228
Hsp92II	CATG	3 cut(s)	101, 317, 435
HspAI	GCGC	1 cut(s)	92
Kzo9I	GATC	1 cut(s)	58
LmnI	GCTCC	2 cut(s)	14, 296
LpnPI	CCDG	8 cut(s)	15, 38, 42, 60, 248, 260, 292, 411
Lsp1109I	GCAGC	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MboII	GAAGA	3 cut(s)	216, 368, 371
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	2 cut(s)	33, 400
MmeI	TCCRAC	2 cut(s)	279, 284
MnlI	CCTC	4 cut(s)	194, 287, 302, 341
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	1 cut(s)	113
MspI	CCGG	2 cut(s)	235, 279
MspR9I	CCNGG	2 cut(s)	30, 280
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	228
NciI	CCSGG	1 cut(s)	280
NdeII	GATC	1 cut(s)	58
NlaIII	CATG	3 cut(s)	101, 317, 435
NmuCI	GTSAC	1 cut(s)	100
PaeR7I	CTCGAG	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	21
PinAI	ACCGGT	1 cut(s)	234
PkrI	GCNGC	1 cut(s)	163
Psp124BI	GAGCTC	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	113
SacI	GAGCTC	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	1 cut(s)	58
ScrFI	CCNGG	2 cut(s)	30, 280
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	9 cut(s)	11, 31, 57, 76, 84, 196, 301, 313, 324
Sfr274I	CTCGAG	1 cut(s)	83
SlaI	CTCGAG	1 cut(s)	83
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	2 cut(s)	83, 332
SmoI	CTYRAG	2 cut(s)	83, 332
Sse9I	AATT	2 cut(s)	33, 400
SstI	GAGCTC	1 cut(s)	11
StyD4I	CCNGG	2 cut(s)	28, 278
TaqI	TCGA	2 cut(s)	70, 84
TasI	AATT	2 cut(s)	33, 400
TfiI	GAWTC	1 cut(s)	21
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	3 cut(s)	86, 368, 378
XapI	RAATTY	1 cut(s)	400
XhoI	CTCGAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.