RchiOBHm_Chr3g0459481

Survival protein SurE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0030004
Physical Location & Seq
Forward (+)
7889485 .. 7891282
1798 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 600 bp
ATGACGACCTCTCTGAAAAGCAGTTTCATGCCTCCGAGCTTGATCTCGAATCTTCAACAAGTTTTGGCTCTCAAAAGCGACGGTGCAGAGAAGCATGCTTCTGAACCAAACAAAGTTTCTTGTAATTCTTCTTCCTCTTCATGTTGCGCTTTGATGCCTTCTGAGGACACTAAAGACAAGCAGTGTCCAAAGCCAGTGGTTTTAGTCACAAATGGAGAGGGAATCGAGTCTCCTGGCCTCACATTTCTCGTCCAAGCTCTCCTTCTCGATTCTCATCTTGAGGTCTGCGTCTGCGCTCCTAAATCAGATAGATCAGTGGCTGGCCACTCTGTAACTGTTGGTGAGACCATTTCAGTGTCTTCTGCACAAATCAATGGCGCCACGGCTTTTGAAGTTTCCGGGACTCCTGCGGATTGTATCTCTTTAGCATTATCAGGGGCATTGTTCTCCAACTTTTCAAAGCCTGCTTTGGTAGTCAGTGGAATAAACAGAGGATCAAGTTCTGGAATCAACATGCTCTACTCGGGTGCTGTTGCTGGAGCTAGAGAGGCGTTGCTATGCGGTGTACTCTCTCTGTGCATATCAATGAATTGGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
SurE

Protein Analysis

199

Amino Acids

20.43

Weight (kDa)

5.55

Isoelectric Point (pI)

37.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SurE PF01975 67 - 197 2.2e-39 Survival protein SurE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030004)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0459481
rosa_samantha Rh2AG084900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 377
AciI CCGC 2 cut(s) 410, 561
AclWI GGATC 1 cut(s) 502
AcoI YGGCCR 1 cut(s) 322
AcyI GRCGYC 1 cut(s) 378
AfaI GTAC 1 cut(s) 567
AgsI TTSAA 3 cut(s) 56, 392, 459
AjnI CCWGG 1 cut(s) 232
AjuI GAANNNNNNNTTGG 4 cut(s) 100, 132, 246, 278
AluBI AGCT 3 cut(s) 39, 257, 542
AluI AGCT 3 cut(s) 39, 257, 542
Alw26I GTCTC 2 cut(s) 234, 338
AlwI GGATC 1 cut(s) 502
AlwNI CAGNNNCTG 1 cut(s) 320
Ama87I CYCGRG 1 cut(s) 523
AoxI GGCC 2 cut(s) 235, 322
AspLEI GCGC 3 cut(s) 149, 296, 380
AsuC2I CCSGG 1 cut(s) 400
AsuHPI GGTGA 1 cut(s) 353
AvaI CYCGRG 1 cut(s) 523
BalI TGGCCA 1 cut(s) 324
BanI GGYRCC 1 cut(s) 377
BarI GAAGNNNNNNTAC 2 cut(s) 115, 147
BbsI GAAGAC 1 cut(s) 351
BceAI ACGGC 1 cut(s) 399
BciT130I CCWGG 1 cut(s) 234
BcnI CCSGG 1 cut(s) 400
BcoDI GTCTC 2 cut(s) 234, 338
BfaI CTAG 1 cut(s) 543
BfoI RGCGCY 1 cut(s) 381
Bme1390I CCNGG 2 cut(s) 234, 400
BmeT110I CYCGRG 1 cut(s) 523
BmiI GGNNCC 1 cut(s) 379
BmrFI CCNGG 2 cut(s) 234, 400
BmsI GCATC 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 351
BpmI CTGGAG 1 cut(s) 558
BpuEI CTTGAG 1 cut(s) 299
BpuMI CCSGG 1 cut(s) 400
BsaBI GATNNNNATC 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 378
BsaI GGTCTC 1 cut(s) 338
BsaJI CCNNGG 1 cut(s) 381
Bse1I ACTGG 1 cut(s) 194
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 381
BseGI GGATG 1 cut(s) 600
BseJI GATNNNNATC 1 cut(s) 273
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 194
BsgI GTGCAG 2 cut(s) 105, 348
BshFI GGCC 2 cut(s) 237, 324
BshNI GGYRCC 1 cut(s) 377
BsiHKCI CYCGRG 1 cut(s) 523
BsiSI CCGG 1 cut(s) 399
BslFI GGGAC 1 cut(s) 415
BsmAI GTCTC 2 cut(s) 234, 338
BsmFI GGGAC 1 cut(s) 415
BsnI GGCC 2 cut(s) 237, 324
Bso31I GGTCTC 1 cut(s) 338
BsoBI CYCGRG 1 cut(s) 523
Bsp143I GATC 3 cut(s) 42, 311, 494
BspACI CCGC 2 cut(s) 410, 561
BspANI GGCC 2 cut(s) 237, 324
BspCNI CTCAG 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 379
BspPI GGATC 1 cut(s) 502
BspT107I GGYRCC 1 cut(s) 377
BspTNI GGTCTC 1 cut(s) 338
BsrI ACTGG 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 3 cut(s) 42, 311, 494
BssNI GRCGYC 1 cut(s) 378
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 2 cut(s) 83, 337
Bst6I CTCTTC 1 cut(s) 142
BstACI GRCGYC 1 cut(s) 378
BstC8I GCNNGC 3 cut(s) 96, 322, 465
BstDEI CTNAG 1 cut(s) 162
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 1 cut(s) 600
BstH2I RGCGCY 1 cut(s) 381
BstHHI GCGC 3 cut(s) 149, 296, 380
BstKTI GATC 3 cut(s) 45, 314, 497
BstMAI GTCTC 2 cut(s) 234, 338
BstMBI GATC 3 cut(s) 42, 311, 494
BstMWI GCNNNNNNNGC 1 cut(s) 548
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 2 cut(s) 98, 517
BstSCI CCNGG 2 cut(s) 232, 398
BstV2I GAAGAC 1 cut(s) 351
BsuRI GGCC 2 cut(s) 237, 324
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 1 cut(s) 600
BtsI GCAGTG 1 cut(s) 188
BtsIMutI CAGTG 5 cut(s) 188, 201, 321, 360, 484
Cac8I GCNNGC 3 cut(s) 96, 322, 465
CaiI CAGNNNCTG 1 cut(s) 320
CfoI GCGC 3 cut(s) 149, 296, 380
CseI GACGC 1 cut(s) 277
Csp6I GTAC 1 cut(s) 566
CspCI CAANNNNNGTGG 4 cut(s) 177, 212, 370, 405
CviAII CATG 4 cut(s) 28, 95, 141, 514
CviQI GTAC 1 cut(s) 566
DdeI CTNAG 1 cut(s) 162
DinI GGCGCC 1 cut(s) 379
DpnI GATC 3 cut(s) 44, 313, 496
DpnII GATC 3 cut(s) 42, 311, 494
EaeI YGGCCR 1 cut(s) 322
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
Eco31I GGTCTC 1 cut(s) 338
Eco88I CYCGRG 1 cut(s) 523
EcoRII CCWGG 1 cut(s) 232
EgeI GGCGCC 1 cut(s) 379
EheI GGCGCC 1 cut(s) 379
FaeI CATG 4 cut(s) 31, 98, 144, 517
FaiI YATR 6 cut(s) 29, 96, 142, 515, 559, 581
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FaqI GGGAC 1 cut(s) 415
FatI CATG 4 cut(s) 27, 94, 140, 513
FspBI CTAG 1 cut(s) 543
GlaI GCGC 3 cut(s) 148, 295, 379
GsuI CTGGAG 1 cut(s) 558
HaeII RGCGCY 1 cut(s) 381
HaeIII GGCC 2 cut(s) 237, 324
HapII CCGG 1 cut(s) 399
HgaI GACGC 1 cut(s) 277
HhaI GCGC 3 cut(s) 149, 296, 380
Hin1I GRCGYC 1 cut(s) 378
Hin1II CATG 4 cut(s) 31, 98, 144, 517
Hin6I GCGC 3 cut(s) 147, 294, 378
HinP1I GCGC 3 cut(s) 147, 294, 378
HinfI GANTC 6 cut(s) 49, 222, 227, 269, 403, 507
HpaII CCGG 1 cut(s) 399
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 1 cut(s) 566
Hpy188I TCNGA 5 cut(s) 15, 36, 103, 163, 307
Hpy188III TCNNGA 4 cut(s) 46, 266, 278, 504
Hpy8I GTNNAC 1 cut(s) 566
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 2 cut(s) 168, 272
HpyCH4III ACNGT 2 cut(s) 83, 337
HpyCH4V TGCA 3 cut(s) 86, 365, 579
HpyF10VI GCNNNNNNNGC 1 cut(s) 548
HpyF3I CTNAG 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 378
Hsp92II CATG 4 cut(s) 31, 98, 144, 517
HspAI GCGC 3 cut(s) 147, 294, 378
KasI GGCGCC 1 cut(s) 377
Kzo9I GATC 3 cut(s) 42, 311, 494
LmnI GCTCC 2 cut(s) 301, 539
LweI GCATC 1 cut(s) 144
MaeI CTAG 1 cut(s) 543
MaeIII GTNAC 2 cut(s) 205, 331
MalI GATC 3 cut(s) 44, 313, 496
MboI GATC 3 cut(s) 42, 311, 494
MboII GAAGA 5 cut(s) 44, 120, 123, 129, 351
MlsI TGGCCA 1 cut(s) 324
MluCI AATT 2 cut(s) 124, 589
MluNI TGGCCA 1 cut(s) 324
Mly113I GGCGCC 1 cut(s) 378
MlyI GAGTC 2 cut(s) 236, 397
MmeI TCCRAC 1 cut(s) 474
MnlI CCTC 9 cut(s) 19, 42, 145, 157, 211, 248, 274, 485, 541
Mox20I TGGCCA 1 cut(s) 324
MscI TGGCCA 1 cut(s) 324
MslI CAYNNNNRTG 2 cut(s) 353, 584
Msp20I TGGCCA 1 cut(s) 324
MspI CCGG 1 cut(s) 399
MspR9I CCNGG 2 cut(s) 234, 400
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 548
NarI GGCGCC 1 cut(s) 378
NciI CCSGG 1 cut(s) 400
NdeII GATC 3 cut(s) 42, 311, 494
NlaIII CATG 4 cut(s) 31, 98, 144, 517
NlaIV GGNNCC 1 cut(s) 379
NmuCI GTSAC 1 cut(s) 205
NspI RCATGY 2 cut(s) 98, 517
PaeI GCATGC 1 cut(s) 98
PfeI GAWTC 4 cut(s) 49, 222, 269, 507
PfoI TCCNGGA 1 cut(s) 398
PleI GAGTC 2 cut(s) 235, 397
PluTI GGCGCC 1 cut(s) 381
PpsI GAGTC 2 cut(s) 235, 397
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 379
PstNI CAGNNNCTG 1 cut(s) 320
RsaI GTAC 1 cut(s) 567
RsaNI GTAC 1 cut(s) 566
RseI CAYNNNNRTG 2 cut(s) 353, 584
Sau3AI GATC 3 cut(s) 42, 311, 494
SchI GAGTC 2 cut(s) 236, 397
ScrFI CCNGG 2 cut(s) 234, 400
SetI ASST 5 cut(s) 11, 41, 259, 285, 544
SfaNI GCATC 1 cut(s) 144
SfoI GGCGCC 1 cut(s) 379
SmiMI CAYNNNNRTG 2 cut(s) 353, 584
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
SphI GCATGC 1 cut(s) 98
Sse9I AATT 2 cut(s) 124, 589
SsiI CCGC 2 cut(s) 410, 561
SspDI GGCGCC 1 cut(s) 377
SspMI CTAG 1 cut(s) 543
StyD4I CCNGG 2 cut(s) 232, 398
TaaI ACNGT 2 cut(s) 83, 337
TaqI TCGA 3 cut(s) 47, 225, 267
TasI AATT 2 cut(s) 124, 589
TatI WGTACW 1 cut(s) 565
TfiI GAWTC 4 cut(s) 49, 222, 269, 507
TscAI CASTG 5 cut(s) 188, 201, 321, 360, 484
TseFI GTSAC 1 cut(s) 205
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 2 cut(s) 16, 129
TspRI CASTG 5 cut(s) 188, 201, 321, 360, 484
XceI RCATGY 2 cut(s) 98, 517
XspI CTAG 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.