Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

9819116 .. 9820983

Gene Structure 1868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGATTGTCAGGCAGGCTACAGCCCAGGCCCAATCAAAGGCCCAAATCAAACTGATCCTCCCCAGCTTCAAAGCTCTCATCTTCCCATCAACTTCAACCCTTTTGAGGGCTGGTTCCGAAAACCCCCAAACCCACTCCCACCCATCAACCTCCTCTCCCTCGCCGACTCATTCTTCCCCAAAACCCCAACCCAGCAGAGGCCGTACCCGCCGGGCTGCTCCATTGATGTGGCTCAGGCCATTGGCTACAAGAGGCTTGAGAAGAGATATTATGATTGTAGGCTCGAGTTCTCTAGAATTATCCCTGGTTTAAGGCCATGGGCGGTTTTGTGTGGAAAAGCAATGGATCAGATAACTTACGAGGGAGAGTGGTATCGCAAACCTCTTGGTACATACATGACTGGCCCTCCATACATTCGAGATTGGAATATGGATGTTCAGACTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4339

Protein Analysis

149

Amino Acids

17.06

Weight (kDa)

8.68

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	209, 323
AclWI	GGATC	2 cut(s)	50, 354
AfaI	GTAC	2 cut(s)	206, 391
AfiI	CCNNNNNNNGG	4 cut(s)	38, 106, 107, 198
AgsI	TTSAA	2 cut(s)	71, 97
AjnI	CCWGG	2 cut(s)	25, 304
AluBI	AGCT	2 cut(s)	67, 75
AluI	AGCT	2 cut(s)	67, 75
AlwI	GGATC	2 cut(s)	50, 354
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	6 cut(s)	28, 40, 200, 237, 314, 403
ApeKI	GCWGC	1 cut(s)	216
AspS9I	GGNCC	3 cut(s)	29, 41, 404
AsuC2I	CCSGG	1 cut(s)	213
AvaI	CYCGRG	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	203
BccI	CCATC	2 cut(s)	95, 152
BceAI	ACGGC	1 cut(s)	187
BciT130I	CCWGG	2 cut(s)	27, 306
BcnI	CCSGG	1 cut(s)	213
BfaI	CTAG	1 cut(s)	294
BfmI	CTRYAG	1 cut(s)	19
BisI	GCNGC	1 cut(s)	217
BlsI	GCNGC	1 cut(s)	218
Bme1390I	CCNGG	3 cut(s)	27, 213, 306
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	3 cut(s)	29, 41, 404
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	3 cut(s)	27, 213, 306
Bpu10I	CCTNAGC	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	1 cut(s)	213
BsaJI	CCNNGG	3 cut(s)	25, 304, 317
BsaXI	ACNNNNNCTCC	6 cut(s)	43, 73, 140, 170, 391, 421
Bsc4I	CCNNNNNNNGG	4 cut(s)	38, 106, 107, 198
Bse1I	ACTGG	1 cut(s)	406
Bse3DI	GCAATG	1 cut(s)	348
BseBI	CCWGG	2 cut(s)	27, 306
BseDI	CCNNGG	3 cut(s)	25, 304, 317
BseGI	GGATG	1 cut(s)	439
BseLI	CCNNNNNNNGG	4 cut(s)	38, 106, 107, 198
BseMI	GCAATG	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	406
BseRI	GAGGAG	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	203
BseYI	CCCAGC	2 cut(s)	63, 192
BshFI	GGCC	6 cut(s)	30, 42, 202, 239, 316, 405
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	1 cut(s)	212
BslI	CCNNNNNNNGG	4 cut(s)	38, 106, 107, 198
BsnI	GGCC	6 cut(s)	30, 42, 202, 239, 316, 405
BsoBI	CYCGRG	1 cut(s)	284
Bsp143I	GATC	2 cut(s)	55, 346
Bsp19I	CCATGG	1 cut(s)	317
BspACI	CCGC	2 cut(s)	209, 323
BspANI	GGCC	6 cut(s)	30, 42, 202, 239, 316, 405
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	116
BspPI	GGATC	2 cut(s)	50, 354
BsrDI	GCAATG	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	406
BssECI	CCNNGG	3 cut(s)	25, 304, 317
BssMI	GATC	2 cut(s)	55, 346
BssT1I	CCWWGG	1 cut(s)	317
Bst2UI	CCWGG	2 cut(s)	27, 306
Bst4CI	ACNGT	1 cut(s)	445
Bst6I	CTCTTC	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	234
BstDSI	CCRYGG	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	439
BstKTI	GATC	2 cut(s)	58, 349
BstMBI	GATC	2 cut(s)	55, 346
BstMWI	GCNNNNNNNGC	1 cut(s)	208
BstNI	CCWGG	2 cut(s)	27, 306
BstSCI	CCNGG	3 cut(s)	25, 211, 304
BstSFI	CTRYAG	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	203
BstXI	CCANNNNNNTGG	1 cut(s)	229
BsuRI	GGCC	6 cut(s)	30, 42, 202, 239, 316, 405
BtgI	CCRYGG	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	439
Cac8I	GCNNGC	1 cut(s)	16
Cfr13I	GGNCC	3 cut(s)	29, 41, 404
Csp6I	GTAC	2 cut(s)	205, 390
CviAII	CATG	2 cut(s)	318, 397
CviQI	GTAC	2 cut(s)	205, 390
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	2 cut(s)	57, 348
DpnII	GATC	2 cut(s)	55, 346
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Eco130I	CCWWGG	1 cut(s)	317
Eco88I	CYCGRG	1 cut(s)	284
EcoRII	CCWGG	2 cut(s)	25, 304
EcoT14I	CCWWGG	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	2 cut(s)	321, 400
FaiI	YATR	7 cut(s)	273, 319, 394, 398, 412, 431, 448
FatI	CATG	2 cut(s)	317, 396
FauI	CCCGC	1 cut(s)	216
Fnu4HI	GCNGC	1 cut(s)	217
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	1 cut(s)	217
FspBI	CTAG	1 cut(s)	294
GluI	GCNGC	1 cut(s)	217
GsaI	CCCAGC	2 cut(s)	67, 196
HaeIII	GGCC	6 cut(s)	30, 42, 202, 239, 316, 405
HapII	CCGG	1 cut(s)	212
Hin1II	CATG	2 cut(s)	321, 400
HinfI	GANTC	1 cut(s)	167
HpaII	CCGG	1 cut(s)	212
Hpy188I	TCNGA	3 cut(s)	119, 351, 441
Hpy188III	TCNNGA	2 cut(s)	294, 419
HpyCH4III	ACNGT	1 cut(s)	445
HpyF10VI	GCNNNNNNNGC	1 cut(s)	208
HpyF3I	CTNAG	1 cut(s)	234
Hsp92II	CATG	2 cut(s)	321, 400
Kzo9I	GATC	2 cut(s)	55, 346
LmnI	GCTCC	1 cut(s)	224
Lsp1109I	GCAGC	1 cut(s)	203
MaeI	CTAG	1 cut(s)	294
MalI	GATC	2 cut(s)	57, 348
MboI	GATC	2 cut(s)	55, 346
MboII	GAAGA	3 cut(s)	74, 166, 274
MluCI	AATT	1 cut(s)	297
MlyI	GAGTC	1 cut(s)	161
MseI	TTAA	1 cut(s)	311
MslI	CAYNNNNRTG	1 cut(s)	227
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	3 cut(s)	27, 213, 306
MvaI	CCWGG	2 cut(s)	27, 306
MwoI	GCNNNNNNNGC	1 cut(s)	208
NciI	CCSGG	1 cut(s)	213
NcoI	CCATGG	1 cut(s)	317
NdeII	GATC	2 cut(s)	55, 346
NlaIII	CATG	2 cut(s)	321, 400
NlaIV	GGNNCC	1 cut(s)	116
PaeR7I	CTCGAG	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	218
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
Psp6I	CCWGG	2 cut(s)	25, 304
PspFI	CCCAGC	2 cut(s)	63, 192
PspGI	CCWGG	2 cut(s)	25, 304
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	3 cut(s)	29, 41, 404
PspXI	VCTCGAGB	1 cut(s)	284
RsaI	GTAC	2 cut(s)	206, 391
RsaNI	GTAC	2 cut(s)	205, 390
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	1 cut(s)	217
Sau3AI	GATC	2 cut(s)	55, 346
Sau96I	GGNCC	3 cut(s)	29, 41, 404
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	3 cut(s)	27, 213, 306
SetI	ASST	4 cut(s)	69, 77, 153, 385
SfcI	CTRYAG	1 cut(s)	19
Sfr274I	CTCGAG	1 cut(s)	284
SlaI	CTCGAG	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	2 cut(s)	257, 284
SmoI	CTYRAG	2 cut(s)	257, 284
Sse9I	AATT	1 cut(s)	297
SsiI	CCGC	2 cut(s)	209, 323
SspMI	CTAG	1 cut(s)	294
StyD4I	CCNGG	3 cut(s)	25, 211, 304
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	1 cut(s)	445
TaqI	TCGA	2 cut(s)	285, 418
TasI	AATT	1 cut(s)	297
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TseI	GCWGC	1 cut(s)	216
XbaI	TCTAGA	1 cut(s)	293
XhoI	CTCGAG	1 cut(s)	284
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.