RchiOBHm_Chr3g0465961

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
N/A
Physical Location & Seq
Reverse (-)
12529987 .. 12530490
504 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
ATGCACTCACCAACTAATGTTCATTGGGTGGCAGTCAAGAGAATCCTACGATATTTGAAGTATACTCTTAATCATGGGTTAGTTTATCAGCCAGGTTCTCACAAGTTAGTTGCCTATTCGGATGCCGATTATGCCGGTGATCCGGATGATCGTCATTCCACTGGTGGATTCTGTTCTCCCTGTCCAGTGCTGAAGCTGAGTACAGGCAACTTGCCTACACAGCTGCTGAGTTGTCTTGGCTTCGATCTCTATTTCGTGATCTTAATGTATTTCCCTCATGTCCCCGGATCTGGTGTGATAATATCAGCTCTATATCTTTGGCCTCCAATCCCGTATTTCATTCCAGAACCAAGCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3

Protein Analysis

119

Amino Acids

13.28

Weight (kDa)

6.99

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 62
AccIII TCCGGA 1 cut(s) 142
AclWI GGATC 2 cut(s) 134, 295
AcuI CTGAAG 1 cut(s) 212
AfaI GTAC 1 cut(s) 202
AfiI CCNNNNNNNGG 1 cut(s) 290
AgsI TTSAA 1 cut(s) 58
AjnI CCWGG 1 cut(s) 91
AluBI AGCT 3 cut(s) 196, 223, 308
AluI AGCT 3 cut(s) 196, 223, 308
AlwI GGATC 2 cut(s) 134, 295
AlwNI CAGNNNCTG 1 cut(s) 226
Aor13HI TCCGGA 1 cut(s) 142
AoxI GGCC 1 cut(s) 320
ApeKI GCWGC 1 cut(s) 223
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 1 cut(s) 149
BbvI GCAGC 1 cut(s) 210
BciT130I CCWGG 1 cut(s) 93
BcnI CCSGG 1 cut(s) 285
BisI GCNGC 1 cut(s) 224
BlsI GCNGC 1 cut(s) 225
Bme1390I CCNGG 2 cut(s) 93, 285
BmrFI CCNGG 2 cut(s) 93, 285
BmsI GCATC 1 cut(s) 112
BpuMI CCSGG 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 283
BsaWI WCCGGW 1 cut(s) 142
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 2 cut(s) 166, 185
BseAI TCCGGA 1 cut(s) 142
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 283
BseGI GGATG 2 cut(s) 127, 151
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMII CTCAG 2 cut(s) 188, 218
BseNI ACTGG 2 cut(s) 166, 185
BseXI GCAGC 1 cut(s) 210
BshFI GGCC 1 cut(s) 322
BsiSI CCGG 3 cut(s) 135, 143, 285
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 266
BsnI GGCC 1 cut(s) 322
Bsp13I TCCGGA 1 cut(s) 142
Bsp143I GATC 5 cut(s) 139, 148, 244, 258, 287
BspANI GGCC 1 cut(s) 322
BspCNI CTCAG 2 cut(s) 189, 219
BspEI TCCGGA 1 cut(s) 142
BspPI GGATC 2 cut(s) 134, 295
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 2 cut(s) 166, 185
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 1 cut(s) 283
BssMI GATC 5 cut(s) 139, 148, 244, 258, 287
BssNAI GTATAC 1 cut(s) 63
Bst1107I GTATAC 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 93
BstDEI CTNAG 2 cut(s) 197, 227
BstF5I GGATG 2 cut(s) 127, 151
BstKTI GATC 5 cut(s) 142, 151, 247, 261, 290
BstMBI GATC 5 cut(s) 139, 148, 244, 258, 287
BstMWI GCNNNNNNNGC 2 cut(s) 131, 220
BstNI CCWGG 1 cut(s) 93
BstSCI CCNGG 2 cut(s) 91, 283
BstV1I GCAGC 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 287
BstYI RGATCY 1 cut(s) 287
BstZ17I GTATAC 1 cut(s) 63
BsuRI GGCC 1 cut(s) 322
BtsCI GGATG 2 cut(s) 127, 151
BtsIMutI CAGTG 2 cut(s) 159, 192
CaiI CAGNNNCTG 1 cut(s) 226
Cfr10I RCCGGY 1 cut(s) 134
Csp6I GTAC 1 cut(s) 201
CviAII CATG 2 cut(s) 74, 278
CviJI RGCY 6 cut(s) 91, 196, 223, 240, 308, 322
CviKI_1 RGCY 6 cut(s) 91, 196, 223, 240, 308, 322
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 2 cut(s) 197, 227
DpnI GATC 5 cut(s) 141, 150, 246, 260, 289
DpnII GATC 5 cut(s) 139, 148, 244, 258, 287
Eco57I CTGAAG 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 91
FaeI CATG 2 cut(s) 77, 281
FaiI YATR 7 cut(s) 63, 75, 132, 279, 313, 356, 358
FaqI GGGAC 1 cut(s) 266
FatI CATG 2 cut(s) 73, 277
FblI GTMKAC 1 cut(s) 62
Fnu4HI GCNGC 1 cut(s) 224
FokI GGATG 2 cut(s) 134, 158
Fsp4HI GCNGC 1 cut(s) 224
GluI GCNGC 1 cut(s) 224
HaeIII GGCC 1 cut(s) 322
HapII CCGG 3 cut(s) 135, 143, 285
Hin1II CATG 2 cut(s) 77, 281
HinfI GANTC 2 cut(s) 42, 168
HpaII CCGG 3 cut(s) 135, 143, 285
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 4 cut(s) 37, 143, 256, 344
Hpy8I GTNNAC 1 cut(s) 63
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 220
HpyF3I CTNAG 2 cut(s) 197, 227
Hsp92II CATG 2 cut(s) 77, 281
Kpn2I TCCGGA 1 cut(s) 142
Kzo9I GATC 5 cut(s) 139, 148, 244, 258, 287
Lsp1109I GCAGC 1 cut(s) 210
LweI GCATC 1 cut(s) 112
MalI GATC 5 cut(s) 141, 150, 246, 260, 289
MboI GATC 5 cut(s) 139, 148, 244, 258, 287
MflI RGATCY 1 cut(s) 287
MnlI CCTC 2 cut(s) 285, 333
MroI TCCGGA 1 cut(s) 142
MseI TTAA 2 cut(s) 69, 263
MspA1I CMGCKG 1 cut(s) 223
MspI CCGG 3 cut(s) 135, 143, 285
MspR9I CCNGG 2 cut(s) 93, 285
MvaI CCWGG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 131, 220
NciI CCSGG 1 cut(s) 285
NdeII GATC 5 cut(s) 139, 148, 244, 258, 287
NlaIII CATG 2 cut(s) 77, 281
PfeI GAWTC 2 cut(s) 42, 168
PkrI GCNGC 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PstNI CAGNNNCTG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 287
PvuII CAGCTG 1 cut(s) 223
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SaqAI TTAA 2 cut(s) 69, 263
SatI GCNGC 1 cut(s) 224
Sau3AI GATC 5 cut(s) 139, 148, 244, 258, 287
ScrFI CCNGG 2 cut(s) 93, 285
SetI ASST 4 cut(s) 97, 198, 225, 310
SfaNI GCATC 1 cut(s) 112
StyD4I CCNGG 2 cut(s) 91, 283
TaqI TCGA 1 cut(s) 243
TatI WGTACW 1 cut(s) 200
TfiI GAWTC 2 cut(s) 42, 168
Tru1I TTAA 2 cut(s) 69, 263
Tru9I TTAA 2 cut(s) 69, 263
TscAI CASTG 2 cut(s) 166, 192
TseI GCWGC 1 cut(s) 223
TspDTI ATGAA 2 cut(s) 11, 328
TspRI CASTG 2 cut(s) 166, 192
XmiI GTMKAC 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.