RchiOBHm_Chr3g0466501

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0029962
Physical Location & Seq
Forward (+)
12968470 .. 12968859
390 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 390 bp
ATGAATGTCCCAGAAGATGAGCAGCCAGCTATTGCTTTAAAAAAAATTTGGTCTGTTAAAGAGGCCGTTCCAAGGGTGTCGATTGACGTTGCCATGGTATACGTAACTGTTTTGGAGACAGTGAGACCTAATAGTTTGGAATTAGAAGCTATTATTAAACAGACGCCATCATGTGTTATTTGTATGGAGCTCTTTATTGACCATCAACGAATTATTCGCTTGGCTTGCTCACACTATTATCACAAACATTGCTTTGTTCGGTGGTTGGAGATAAATAACACTTGTCCCCTCTGTCGATGCCCAATGCCAATTGAAGAGGATGTGGAGGAGCCCTATGGATGCCTAATGGTTGCTCTATCGCCAAATCCCTCTTCATTATATGGCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

129

Amino Acids

14.74

Weight (kDa)

5.3

Isoelectric Point (pI)

65.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 57 - 99 3e-14 Ring finger domain
zf-C3HC4_2 PF13923 58 - 98 1e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 58 - 84 7.8e-06 RING-like zinc finger
zf-rbx1 PF12678 70 - 99 8.9e-08 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029962)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0466501
rosa_multiflora Rmu_sc0022726.1_g000002

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 99
AcsI RAATTY 1 cut(s) 45
AcyI GRCGYC 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 72
AgsI TTSAA 1 cut(s) 314
AjuI GAANNNNNNNTTGG 2 cut(s) 355, 387
AluBI AGCT 3 cut(s) 29, 149, 190
AluI AGCT 3 cut(s) 29, 149, 190
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 2 cut(s) 110, 118
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 2 cut(s) 22, 384
ApoI RAATTY 1 cut(s) 45
BanII GRGCYC 2 cut(s) 192, 333
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 34, 371
BccI CCATC 2 cut(s) 175, 210
BceAI ACGGC 1 cut(s) 50
BcoDI GTCTC 2 cut(s) 110, 118
BisI GCNGC 2 cut(s) 23, 385
BlsI GCNGC 2 cut(s) 24, 386
BmiI GGNNCC 1 cut(s) 330
BmsI GCATC 2 cut(s) 287, 329
BsaAI YACGTR 1 cut(s) 103
BsaHI GRCGYC 1 cut(s) 164
BsaI GGTCTC 1 cut(s) 118
BsaJI CCNNGG 2 cut(s) 71, 93
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 247
BseDI CCNNGG 2 cut(s) 71, 93
BseGI GGATG 2 cut(s) 325, 344
BseLI CCNNNNNNNGG 1 cut(s) 72
BseMI GCAATG 1 cut(s) 247
BseRI GAGGAG 1 cut(s) 341
BseXI GCAGC 2 cut(s) 34, 371
BshFI GGCC 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 192
BslFI GGGAC 1 cut(s) 270
BslI CCNNNNNNNGG 1 cut(s) 72
BsmAI GTCTC 2 cut(s) 110, 118
BsmFI GGGAC 1 cut(s) 270
BsnI GGCC 1 cut(s) 65
Bso31I GGTCTC 1 cut(s) 118
Bsp1286I GDGCHC 2 cut(s) 192, 333
Bsp19I CCATGG 1 cut(s) 93
BspANI GGCC 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 330
BspTNI GGTCTC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 247
BssECI CCNNGG 2 cut(s) 71, 93
BssNAI GTATAC 1 cut(s) 100
BssNI GRCGYC 1 cut(s) 164
BssT1I CCWWGG 2 cut(s) 71, 93
Bst1107I GTATAC 1 cut(s) 100
Bst4CI ACNGT 2 cut(s) 109, 121
Bst6I CTCTTC 2 cut(s) 309, 376
BstACI GRCGYC 1 cut(s) 164
BstBAI YACGTR 1 cut(s) 103
BstC8I GCNNGC 2 cut(s) 27, 226
BstDSI CCRYGG 1 cut(s) 93
BstF5I GGATG 2 cut(s) 325, 344
BstMAI GTCTC 2 cut(s) 110, 118
BstMWI GCNNNNNNNGC 1 cut(s) 225
BstSNI TACGTA 1 cut(s) 103
BstV1I GCAGC 2 cut(s) 34, 371
BstZ17I GTATAC 1 cut(s) 100
BsuRI GGCC 1 cut(s) 65
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 2 cut(s) 325, 344
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 2 cut(s) 27, 226
CseI GACGC 1 cut(s) 172
CviAII CATG 2 cut(s) 94, 171
CviJI RGCY 8 cut(s) 25, 29, 65, 149, 190, 224, 331, 384
CviKI_1 RGCY 8 cut(s) 25, 29, 65, 149, 190, 224, 331, 384
DraI TTTAAA 1 cut(s) 39
Eam1104I CTCTTC 2 cut(s) 309, 376
EarI CTCTTC 2 cut(s) 309, 376
Ecl136II GAGCTC 1 cut(s) 190
Eco105I TACGTA 1 cut(s) 103
Eco130I CCWWGG 2 cut(s) 71, 93
Eco24I GRGCYC 2 cut(s) 192, 333
Eco31I GGTCTC 1 cut(s) 118
Eco53kI GAGCTC 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 190
EcoT14I CCWWGG 2 cut(s) 71, 93
EcoT38I GRGCYC 2 cut(s) 192, 333
ErhI CCWWGG 2 cut(s) 71, 93
FaeI CATG 2 cut(s) 97, 174
FaiI YATR 7 cut(s) 95, 100, 172, 185, 336, 379, 381
FaqI GGGAC 1 cut(s) 270
FatI CATG 2 cut(s) 93, 170
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 2 cut(s) 23, 385
FokI GGATG 2 cut(s) 332, 351
FriOI GRGCYC 2 cut(s) 192, 333
Fsp4HI GCNGC 2 cut(s) 23, 385
GluI GCNGC 2 cut(s) 23, 385
HaeIII GGCC 1 cut(s) 65
HgaI GACGC 1 cut(s) 172
Hin1I GRCGYC 1 cut(s) 164
Hin1II CATG 2 cut(s) 97, 174
Hpy166II GTNNAC 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 100
HpyCH4III ACNGT 2 cut(s) 109, 121
HpyCH4IV ACGT 2 cut(s) 87, 102
HpyF10VI GCNNNNNNNGC 1 cut(s) 225
HpySE526I ACGT 2 cut(s) 87, 102
Hsp92I GRCGYC 1 cut(s) 164
Hsp92II CATG 2 cut(s) 97, 174
LmnI GCTCC 2 cut(s) 187, 328
LpnPI CCDG 2 cut(s) 24, 39
Lsp1109I GCAGC 2 cut(s) 34, 371
LweI GCATC 2 cut(s) 287, 329
MaeII ACGT 2 cut(s) 87, 102
MaeIII GTNAC 1 cut(s) 103
MboII GAAGA 3 cut(s) 26, 326, 363
MfeI CAATTG 1 cut(s) 309
MhlI GDGCHC 2 cut(s) 192, 333
MluCI AATT 4 cut(s) 45, 140, 210, 309
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 5 cut(s) 55, 299, 310, 319, 379
MseI TTAA 3 cut(s) 38, 57, 156
MunI CAATTG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 225
NcoI CCATGG 1 cut(s) 93
NlaIII CATG 2 cut(s) 97, 174
NlaIV GGNNCC 1 cut(s) 330
PkrI GCNGC 2 cut(s) 24, 386
Ppu21I YACGTR 1 cut(s) 103
Psp124BI GAGCTC 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 330
SacI GAGCTC 1 cut(s) 192
SaqAI TTAA 3 cut(s) 38, 57, 156
SatI GCNGC 2 cut(s) 23, 385
SduI GDGCHC 2 cut(s) 192, 333
SetI ASST 6 cut(s) 31, 90, 105, 130, 151, 192
SfaNI GCATC 2 cut(s) 287, 329
SgeI CNNG 8 cut(s) 23, 38, 84, 106, 183, 232, 237, 294
SnaBI TACGTA 1 cut(s) 103
Sse9I AATT 4 cut(s) 45, 140, 210, 309
SstI GAGCTC 1 cut(s) 192
StyI CCWWGG 2 cut(s) 71, 93
TaaI ACNGT 2 cut(s) 109, 121
TaiI ACGT 2 cut(s) 90, 105
TaqI TCGA 2 cut(s) 80, 295
TasI AATT 4 cut(s) 45, 140, 210, 309
Tru1I TTAA 3 cut(s) 38, 57, 156
Tru9I TTAA 3 cut(s) 38, 57, 156
TscAI CASTG 1 cut(s) 126
TseI GCWGC 2 cut(s) 22, 384
TspDTI ATGAA 2 cut(s) 17, 363
TspRI CASTG 1 cut(s) 126
XapI RAATTY 1 cut(s) 45
XmiI GTMKAC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.