Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

13204030 .. 13206484

Gene Structure 2455 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGAAAAACAAAAAACAGTTCTCCAATGTTCTCCTTGTCTGCTTTATATTATGCACCATCTGTTATGCATCAATGGCAGTTTTTGGGTACTTAATGTTCGGGTCAACAGTTCAATCGCAGATAACTCTAAACCTCCCGACTAGCAAAATTAGCTCACAAGTCGCAATATACACCACCCTGGTCAATCCAATATCCAAATTTGCTTTGATGGTTACACCAATAATGAATGCTGCAAAAAGATGGTTTCCTGGTTACCAGAATAAAAGAGTCTTTAACATATTAGTCAGTACCACCCTGGTAATCAGCTGTGTTATAGTAGCTTTGGCTGTACCCTTTTTCGCATATCTCATGGCACTTGTTGGAGCGTTTTTGAGTGTCACAGCTTCAATTATAATGCCATGCTTTTGCTACCTTAAGATTTCTTGCACTTATCGAAAAATTGGATGTGAGATGTTGATCGTATGGGGTATTATACTACTAGGTGCTGCGGTGTTGACAGTATCTGTTTGTAGTGTCTTTGCCGCAGCCTTTTCTGGTTCTGCAAGCAAGTTGTTAGATTTGAATGTTGCCGAGACATATATGTGGGCACAAGCATTTAATGACTTACAGAGTAATGTAAATGGGGAAATTAGAAATATACTTTCTAGTGGTAGAGTTACGGTACTAAAAGAGCTGGAAGCAGTTGATGGTATTGTGAAGCACTTGTATCCTATGATCCAAGATGACGTGGCCCTCGCAGAAGAAGAAGCATTCAAGAATTCTACTTCAGATTTAGAAAGGAAGGCACAGAATCTTTCCCAAGGACTTGATCTTCTGACCAAGGAAGTGGATGGGTTTTTCCAAATCCTTTTGACTGGACGCGAAGCCTTGCTTTCTAAGCTGAGATCAGGTGGAGCAGTCTCTGACCAGATGATGATGGGAAATGTAGAAGGGCAGGTTGTGAGCTCAATTCAAGTTTTTATGACAGTCATCAAATATACTCCCCAGGCATACATGAACTTCATAAGAAAGAGCACAGATGGATTAAGTATTTTCTTTATTCTACTTGATTTTTCGGGAGGAGTGGGAAATTCTTGGGTGAACTTCTATGGAAACATAGGGAAGACACTGCTATCTTTGATATGTGTATCATTTGATCTTCTTTTCATTTGCCAACATTATGTGCTGTATCCTTCCAAGAAGGCATTGATATCTCCTAAAATGATCACCAACAAGGAGGACTTGGAGCCCCTTGTCAGTTCTGATAATCACCGGCCAAGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

421

Amino Acids

46.37

Weight (kDa)

8.54

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	1 - 170	1e-21	Transmembrane amino acid transporter protein
PQ-loop	PF04193	312 - 357	1.5e-13	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	392
Acc36I	ACCTGC	1 cut(s)	925
AccII	CGCG	1 cut(s)	861
AciI	CCGC	2 cut(s)	488, 522
AclWI	GGATC	1 cut(s)	709
AcoI	YGGCCR	1 cut(s)	1253
AcsI	RAATTY	3 cut(s)	197, 757, 1069
AcuI	CTGAAG	1 cut(s)	750
AfaI	GTAC	4 cut(s)	89, 289, 330, 663
AflII	CTTAAG	1 cut(s)	413
AgsI	TTSAA	5 cut(s)	113, 387, 562, 754, 953
AjiI	CACGTC	1 cut(s)	727
AjnI	CCWGG	4 cut(s)	177, 247, 294, 984
AluBI	AGCT	7 cut(s)	153, 306, 320, 383, 673, 880, 945
AluI	AGCT	7 cut(s)	153, 306, 320, 383, 673, 880, 945
Alw21I	GWGCWC	2 cut(s)	947, 1016
Alw26I	GTCTC	2 cut(s)	566, 904
AlwI	GGATC	1 cut(s)	709
AlwNI	CAGNNNCTG	2 cut(s)	503, 902
AoxI	GGCC	2 cut(s)	729, 1253
ApeKI	GCWGC	3 cut(s)	230, 485, 524
ApoI	RAATTY	3 cut(s)	197, 757, 1069
AspS9I	GGNCC	1 cut(s)	730
AsuHPI	GGTGA	3 cut(s)	1090, 1198, 1241
BaeGI	GKGCMC	1 cut(s)	589
BanII	GRGCYC	2 cut(s)	947, 1230
BbsI	GAAGAC	1 cut(s)	1109
Bbv12I	GWGCWC	2 cut(s)	947, 1016
BbvI	GCAGC	3 cut(s)	217, 472, 536
BccI	CCATC	7 cut(s)	65, 202, 234, 680, 824, 910, 1013
BciT130I	CCWGG	4 cut(s)	179, 249, 296, 986
BciVI	GTATCC	2 cut(s)	717, 1179
BclI	TGATCA	1 cut(s)	1203
BcoDI	GTCTC	2 cut(s)	566, 904
BfaI	CTAG	3 cut(s)	141, 479, 645
BfrI	CTTAAG	1 cut(s)	413
BfuAI	ACCTGC	1 cut(s)	925
BfuI	GTATCC	2 cut(s)	717, 1179
BisI	GCNGC	4 cut(s)	231, 486, 522, 525
BlsI	GCNGC	4 cut(s)	232, 487, 523, 526
Bme1390I	CCNGG	4 cut(s)	179, 249, 296, 986
BmgBI	CACGTC	1 cut(s)	727
BmgT120I	GGNCC	1 cut(s)	730
BmiI	GGNNCC	1 cut(s)	1227
BmrFI	CCNGG	4 cut(s)	179, 249, 296, 986
BmsI	GCATC	1 cut(s)	77
BpiI	GAAGAC	1 cut(s)	1109
BsaBI	GATNNNNATC	1 cut(s)	455
BsaJI	CCNNGG	5 cut(s)	177, 294, 799, 819, 984
Bse118I	RCCGGY	1 cut(s)	1251
Bse1I	ACTGG	1 cut(s)	859
Bse8I	GATNNNNATC	1 cut(s)	455
BseBI	CCWGG	4 cut(s)	179, 249, 296, 986
BseDI	CCNNGG	5 cut(s)	177, 294, 799, 819, 984
BseGI	GGATG	2 cut(s)	449, 835
BseJI	GATNNNNATC	1 cut(s)	455
BseMII	CTCAG	1 cut(s)	872
BseNI	ACTGG	1 cut(s)	859
BseRI	GAGGAG	1 cut(s)	1074
BseSI	GKGCMC	1 cut(s)	589
BseXI	GCAGC	3 cut(s)	217, 472, 536
Bsh1236I	CGCG	1 cut(s)	861
BshFI	GGCC	2 cut(s)	731, 1255
BsiHKAI	GWGCWC	2 cut(s)	947, 1016
BsiSI	CCGG	1 cut(s)	1252
BsmAI	GTCTC	2 cut(s)	566, 904
BsmI	GAATGC	2 cut(s)	232, 749
BsnI	GGCC	2 cut(s)	731, 1255
Bsp1286I	GDGCHC	4 cut(s)	589, 947, 1016, 1230
Bsp143I	GATC	6 cut(s)	456, 714, 808, 884, 1135, 1203
BspACI	CCGC	2 cut(s)	488, 522
BspANI	GGCC	2 cut(s)	731, 1255
BspCNI	CTCAG	1 cut(s)	873
BspFNI	CGCG	1 cut(s)	861
BspLI	GGNNCC	1 cut(s)	1227
BspMI	ACCTGC	1 cut(s)	925
BspPI	GGATC	1 cut(s)	709
BspTI	CTTAAG	1 cut(s)	413
BsrFI	RCCGGY	1 cut(s)	1251
BsrI	ACTGG	1 cut(s)	859
BssAI	RCCGGY	1 cut(s)	1251
BssECI	CCNNGG	5 cut(s)	177, 294, 799, 819, 984
BssMI	GATC	6 cut(s)	456, 714, 808, 884, 1135, 1203
BssT1I	CCWWGG	2 cut(s)	799, 819
Bst2UI	CCWGG	4 cut(s)	179, 249, 296, 986
Bst4CI	ACNGT	5 cut(s)	18, 109, 499, 661, 967
BstAFI	CTTAAG	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	544
BstDEI	CTNAG	2 cut(s)	876, 881
BstEII	GGTNACC	1 cut(s)	251
BstF5I	GGATG	2 cut(s)	449, 835
BstFNI	CGCG	1 cut(s)	861
BstKTI	GATC	6 cut(s)	459, 717, 811, 887, 1138, 1206
BstMAI	GTCTC	2 cut(s)	566, 904
BstMBI	GATC	6 cut(s)	456, 714, 808, 884, 1135, 1203
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 150, 877
BstNI	CCWGG	4 cut(s)	179, 249, 296, 986
BstPI	GGTNACC	1 cut(s)	251
BstSCI	CCNGG	4 cut(s)	177, 247, 294, 984
BstSLI	GKGCMC	1 cut(s)	589
BstUI	CGCG	1 cut(s)	861
BstV1I	GCAGC	3 cut(s)	217, 472, 536
BstV2I	GAAGAC	1 cut(s)	1109
BstXI	CCANNNNNNTGG	1 cut(s)	826
BsuI	GTATCC	2 cut(s)	717, 1179
BsuRI	GGCC	2 cut(s)	731, 1255
BtrI	CACGTC	1 cut(s)	727
BtsCI	GGATG	2 cut(s)	449, 835
BtsI	GCAGTG	1 cut(s)	1106
BtsIMutI	CAGTG	1 cut(s)	1106
BveI	ACCTGC	1 cut(s)	925
Cac8I	GCNNGC	1 cut(s)	544
CaiI	CAGNNNCTG	2 cut(s)	503, 902
Cfr10I	RCCGGY	1 cut(s)	1251
Cfr13I	GGNCC	1 cut(s)	730
CseI	GACGC	1 cut(s)	867
Csp6I	GTAC	4 cut(s)	88, 288, 329, 662
CviAII	CATG	3 cut(s)	349, 399, 994
CviQI	GTAC	4 cut(s)	88, 288, 329, 662
DdeI	CTNAG	2 cut(s)	876, 881
DpnI	GATC	6 cut(s)	458, 716, 810, 886, 1137, 1205
DpnII	GATC	6 cut(s)	456, 714, 808, 884, 1135, 1203
EaeI	YGGCCR	1 cut(s)	1253
Ecl136II	GAGCTC	1 cut(s)	945
Eco130I	CCWWGG	2 cut(s)	799, 819
Eco24I	GRGCYC	2 cut(s)	947, 1230
Eco32I	GATATC	1 cut(s)	1191
Eco53kI	GAGCTC	1 cut(s)	945
Eco57I	CTGAAG	1 cut(s)	750
Eco91I	GGTNACC	1 cut(s)	251
EcoICRI	GAGCTC	1 cut(s)	945
EcoO65I	GGTNACC	1 cut(s)	251
EcoRI	GAATTC	1 cut(s)	757
EcoRII	CCWGG	4 cut(s)	177, 247, 294, 984
EcoRV	GATATC	1 cut(s)	1191
EcoT14I	CCWWGG	2 cut(s)	799, 819
EcoT22I	ATGCAT	1 cut(s)	70
EcoT38I	GRGCYC	2 cut(s)	947, 1230
ErhI	CCWWGG	2 cut(s)	799, 819
FaeI	CATG	3 cut(s)	352, 402, 997
FalI	AAGNNNNNCTT	4 cut(s)	855, 887, 1205, 1237
FatI	CATG	3 cut(s)	348, 398, 993
FbaI	TGATCA	1 cut(s)	1203
Fnu4HI	GCNGC	4 cut(s)	231, 486, 522, 525
FokI	GGATG	2 cut(s)	456, 842
FriOI	GRGCYC	2 cut(s)	947, 1230
Fsp4HI	GCNGC	4 cut(s)	231, 486, 522, 525
FspBI	CTAG	3 cut(s)	141, 479, 645
GluI	GCNGC	4 cut(s)	231, 486, 522, 525
HaeIII	GGCC	2 cut(s)	731, 1255
HapII	CCGG	1 cut(s)	1252
HgaI	GACGC	1 cut(s)	867
Hin1II	CATG	3 cut(s)	352, 402, 997
HincII	GTYRAC	2 cut(s)	105, 495
HindII	GTYRAC	2 cut(s)	105, 495
HinfI	GANTC	2 cut(s)	267, 790
HpaII	CCGG	1 cut(s)	1252
HphI	GGTGA	3 cut(s)	1090, 1198, 1241
Hpy166II	GTNNAC	3 cut(s)	105, 495, 1081
Hpy188I	TCNGA	5 cut(s)	769, 816, 904, 1243, 1265
Hpy188III	TCNNGA	3 cut(s)	136, 754, 1056
Hpy8I	GTNNAC	3 cut(s)	105, 495, 1081
HpyAV	CCTTC	4 cut(s)	775, 923, 1174, 1182
HpyCH4III	ACNGT	5 cut(s)	18, 109, 499, 661, 967
HpyCH4IV	ACGT	1 cut(s)	726
HpyCH4V	TGCA	5 cut(s)	54, 68, 233, 426, 542
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 150, 877
HpyF3I	CTNAG	2 cut(s)	876, 881
HpySE526I	ACGT	1 cut(s)	726
Hsp92II	CATG	3 cut(s)	352, 402, 997
Ksp22I	TGATCA	1 cut(s)	1203
Kzo9I	GATC	6 cut(s)	456, 714, 808, 884, 1135, 1203
LmnI	GCTCC	3 cut(s)	362, 893, 1225
Lsp1109I	GCAGC	3 cut(s)	217, 472, 536
LweI	GCATC	1 cut(s)	77
MaeI	CTAG	3 cut(s)	141, 479, 645
MaeII	ACGT	1 cut(s)	726
MaeIII	GTNAC	4 cut(s)	211, 251, 376, 655
MalI	GATC	6 cut(s)	458, 716, 810, 886, 1137, 1205
MboI	GATC	6 cut(s)	456, 714, 808, 884, 1135, 1203
MboII	GAAGA	5 cut(s)	752, 755, 803, 1114, 1130
MhlI	GDGCHC	4 cut(s)	589, 947, 1016, 1230
MluCI	AATT	8 cut(s)	147, 197, 387, 438, 627, 757, 948, 1069
MlyI	GAGTC	1 cut(s)	276
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	4 cut(s)	143, 743, 1052, 1210
Mph1103I	ATGCAT	1 cut(s)	70
MseI	TTAA	5 cut(s)	92, 273, 414, 597, 1025
MslI	CAYNNNNRTG	1 cut(s)	580
MspA1I	CMGCKG	1 cut(s)	306
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	1 cut(s)	1252
MspR9I	CCNGG	4 cut(s)	179, 249, 296, 986
Mva1269I	GAATGC	2 cut(s)	232, 749
MvaI	CCWGG	4 cut(s)	179, 249, 296, 986
MvnI	CGCG	1 cut(s)	861
MwoI	GCNNNNNNNGC	3 cut(s)	74, 150, 877
NdeII	GATC	6 cut(s)	456, 714, 808, 884, 1135, 1203
NlaIII	CATG	3 cut(s)	352, 402, 997
NlaIV	GGNNCC	1 cut(s)	1227
NmeAIII	GCCGAG	1 cut(s)	595
NmuCI	GTSAC	1 cut(s)	376
NsiI	ATGCAT	1 cut(s)	70
PctI	GAATGC	2 cut(s)	232, 749
PfeI	GAWTC	1 cut(s)	790
PkrI	GCNGC	4 cut(s)	232, 487, 523, 526
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
PsiI	TTATAA	1 cut(s)	392
Psp124BI	GAGCTC	1 cut(s)	947
Psp6I	CCWGG	4 cut(s)	177, 247, 294, 984
PspEI	GGTNACC	1 cut(s)	251
PspGI	CCWGG	4 cut(s)	177, 247, 294, 984
PspN4I	GGNNCC	1 cut(s)	1227
PspPI	GGNCC	1 cut(s)	730
PsrI	GAACNNNNNNTAC	2 cut(s)	80, 112
PstNI	CAGNNNCTG	2 cut(s)	503, 902
PvuII	CAGCTG	1 cut(s)	306
RsaI	GTAC	4 cut(s)	89, 289, 330, 663
RsaNI	GTAC	4 cut(s)	88, 288, 329, 662
RseI	CAYNNNNRTG	1 cut(s)	580
SacI	GAGCTC	1 cut(s)	947
SaqAI	TTAA	5 cut(s)	92, 273, 414, 597, 1025
SatI	GCNGC	4 cut(s)	231, 486, 522, 525
Sau3AI	GATC	6 cut(s)	456, 714, 808, 884, 1135, 1203
Sau96I	GGNCC	1 cut(s)	730
SchI	GAGTC	1 cut(s)	276
ScrFI	CCNGG	4 cut(s)	179, 249, 296, 986
SduI	GDGCHC	4 cut(s)	589, 947, 1016, 1230
SfaNI	GCATC	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	580
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	8 cut(s)	147, 197, 387, 438, 627, 757, 948, 1069
SsiI	CCGC	2 cut(s)	488, 522
SspMI	CTAG	3 cut(s)	141, 479, 645
SstI	GAGCTC	1 cut(s)	947
StyD4I	CCNGG	4 cut(s)	177, 247, 294, 984
StyI	CCWWGG	2 cut(s)	799, 819
TaaI	ACNGT	5 cut(s)	18, 109, 499, 661, 967
TaiI	ACGT	1 cut(s)	729
TaqI	TCGA	1 cut(s)	433
TasI	AATT	8 cut(s)	147, 197, 387, 438, 627, 757, 948, 1069
TauI	GCSGC	1 cut(s)	524
TfiI	GAWTC	1 cut(s)	790
Tru1I	TTAA	5 cut(s)	92, 273, 414, 597, 1025
Tru9I	TTAA	5 cut(s)	92, 273, 414, 597, 1025
TscAI	CASTG	1 cut(s)	1113
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	3 cut(s)	230, 485, 524
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	5 cut(s)	17, 239, 991, 1010, 1135
TspRI	CASTG	1 cut(s)	1113
Vha464I	CTTAAG	1 cut(s)	413
XapI	RAATTY	3 cut(s)	197, 757, 1069
XspI	CTAG	3 cut(s)	141, 479, 645
Zsp2I	ATGCAT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.