RchiOBHm_Chr3g0466991

SAWADEE domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
N/A
Physical Location & Seq
Forward (+)
13265133 .. 13265713
581 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 174 bp
ATGGACTCTATCAGAGAAGCGGAGAGTGCCACTGAACTTGAAGCCTTGTGCAAGCAGGATTCTTCTTGGTATCCCTGCCAGGTTTCCCTCAGAGTGCCATGGTTCTGGACTGCATATGGGTGTGACTTGATGAGTATGCCACAACTGCCATCTGGATTTTCGGCAACATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

57

Amino Acids

6.44

Weight (kDa)

4.2

Isoelectric Point (pI)

63.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 20
AgsI TTSAA 1 cut(s) 41
AjnI CCWGG 1 cut(s) 78
BccI CCATC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 80
BciVI GTATCC 1 cut(s) 81
BfuI GTATCC 1 cut(s) 81
Bme1390I CCNGG 1 cut(s) 80
BmrFI CCNGG 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 98
BseMII CTCAG 1 cut(s) 103
Bsp19I CCATGG 1 cut(s) 98
BspACI CCGC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 98
BssT1I CCWWGG 1 cut(s) 98
Bst2UI CCWGG 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 89
BstDSI CCRYGG 1 cut(s) 98
BstMWI GCNNNNNNNGC 2 cut(s) 26, 145
BstNI CCWGG 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 78
BstXI CCANNNNNNTGG 1 cut(s) 105
BsuI GTATCC 1 cut(s) 81
BtgI CCRYGG 1 cut(s) 98
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 53
CspCI CAANNNNNGTGG 2 cut(s) 19, 54
CviAII CATG 1 cut(s) 99
CviJI RGCY 1 cut(s) 44
CviKI_1 RGCY 1 cut(s) 44
DdeI CTNAG 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 98
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 1 cut(s) 102
FaiI YATR 4 cut(s) 100, 115, 117, 137
FatI CATG 1 cut(s) 98
FauNDI CATATG 1 cut(s) 115
Hin1II CATG 1 cut(s) 102
HinfI GANTC 2 cut(s) 5, 59
Hpy188I TCNGA 2 cut(s) 14, 92
Hpy188III TCNNGA 2 cut(s) 106, 153
HpyCH4V TGCA 2 cut(s) 51, 113
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 145
HpyF3I CTNAG 1 cut(s) 89
Hsp92II CATG 1 cut(s) 102
LpnPI CCDG 6 cut(s) 41, 65, 88, 91, 92, 138
MaeIII GTNAC 1 cut(s) 122
MboII GAAGA 1 cut(s) 54
MnlI CCTC 1 cut(s) 98
MslI CAYNNNNRTG 1 cut(s) 118
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 26, 145
NcoI CCATGG 1 cut(s) 98
NdeI CATATG 1 cut(s) 115
NlaIII CATG 1 cut(s) 102
NmuCI GTSAC 1 cut(s) 122
PfeI GAWTC 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
RseI CAYNNNNRTG 1 cut(s) 118
ScrFI CCNGG 1 cut(s) 80
SetI ASST 1 cut(s) 84
SmiMI CAYNNNNRTG 1 cut(s) 118
SsiI CCGC 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 98
TfiI GAWTC 1 cut(s) 59
TscAI CASTG 1 cut(s) 37
TseFI GTSAC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 122
TspRI CASTG 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.