Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

14340492 .. 14342250

Gene Structure 1759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGTGTCTGTGAGTTATGGGTGGTACTTCACATTTGTACAAGGATTTGTGTATCTATTTCTGATTTATCTTCAAGGCTTTACCACCAAGCAAATGGTGAACCCATGGAAGACTTATGTGAAGCTATCTGCTGTGCTTATGGGCTCTCATGGACTTACCAAAGGCTCCTTGGCTTTTCTCAACTCCCCTGCACAGCTAATGTTCAAATCAACAAAGGGGAAAGAGTTTAATTACTCTGCAGCCTCTCATGTTAACTTCATGATTTTGGTCCTTTTGGGGTTTCATGTTTTGCCTTTGATGATAATGGGAGCCTTCATACCAGGTTTGAGGCGGAAGTACCCACCTCATGAGTACGTTTCTGCAATCGTTCTGGTGGTGGGTCTGATCCTATTCACCTTAGTGGATGCACAAACATCTCCCAACTTCAGCGTGATTGGTGTGGTGATGGTATCGGGTGCTCTAGTCATGGATTCGTTTTTGGGTAATTTGCAAGAAGCAATATTTACCATGAATCCTGAAACCACACAGATGGAGATGTTGTTTTGCTCTACAGTAGTTGGTCTACCTTTCTTGGTGCCACCAATGATTTTGACAGGAGAATTATTCAAAGCGTGGAGTTCATGTTCTCAGATAACTTGCCAGTTACAAAATCTTTTGATTCCAGACTTGTTACATTCCTCGCAAGCCTCTCAGTTACACTTACACCTAACCTTTTGGAGGAAGACAGACCAGATGATGCCTGTGATGCCTACCATACATACTTTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

256

Amino Acids

28.62

Weight (kDa)

8.75

Isoelectric Point (pI)

32.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	4 - 72	9.2e-12	UAA transporter family
UAA	PF08449	93 - 223	1.1e-28	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	574
AccI	GTMKAC	1 cut(s)	562
AciI	CCGC	1 cut(s)	331
AclWI	GGATC	1 cut(s)	379
AcuI	CTGAAG	1 cut(s)	409
AfaI	GTAC	4 cut(s)	26, 39, 338, 353
AfiI	CCNNNNNNNGG	1 cut(s)	717
AgsI	TTSAA	3 cut(s)	74, 205, 607
AjnI	CCWGG	1 cut(s)	319
AleI	CACNNNNGTG	1 cut(s)	398
AloI	GAACNNNNNNTCC	2 cut(s)	607, 639
AluBI	AGCT	2 cut(s)	124, 196
AluI	AGCT	2 cut(s)	124, 196
Alw21I	GWGCWC	1 cut(s)	460
AlwI	GGATC	1 cut(s)	379
ApeKI	GCWGC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	268
AsuHPI	GGTGA	3 cut(s)	109, 385, 454
AvaII	GGWCC	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	574
BanII	GRGCYC	1 cut(s)	146
BbsI	GAAGAC	2 cut(s)	116, 728
Bbv12I	GWGCWC	1 cut(s)	460
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	2 cut(s)	439, 523
BciT130I	CCWGG	1 cut(s)	321
BfaI	CTAG	1 cut(s)	461
BfmI	CTRYAG	2 cut(s)	237, 549
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	3 cut(s)	166, 310, 576
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	3 cut(s)	394, 726, 735
BpiI	GAAGAC	2 cut(s)	116, 728
BsaJI	CCNNGG	2 cut(s)	104, 168
BsaXI	ACNNNNNCTCC	4 cut(s)	524, 554, 607, 637
Bsc4I	CCNNNNNNNGG	1 cut(s)	717
Bse1I	ACTGG	1 cut(s)	640
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	104, 168
BseGI	GGATG	1 cut(s)	409
BseLI	CCNNNNNNNGG	1 cut(s)	717
BseMII	CTCAG	2 cut(s)	641, 704
BseNI	ACTGG	1 cut(s)	640
BseXI	GCAGC	1 cut(s)	251
BsgI	GTGCAG	1 cut(s)	174
BshNI	GGYRCC	1 cut(s)	574
BsiHKAI	GWGCWC	1 cut(s)	460
BslI	CCNNNNNNNGG	1 cut(s)	717
Bsp1286I	GDGCHC	2 cut(s)	146, 460
Bsp1407I	TGTACA	1 cut(s)	37
Bsp143I	GATC	1 cut(s)	384
Bsp19I	CCATGG	1 cut(s)	104
BspACI	CCGC	1 cut(s)	331
BspCNI	CTCAG	2 cut(s)	640, 703
BspHI	TCATGA	2 cut(s)	258, 346
BspLI	GGNNCC	3 cut(s)	166, 310, 576
BspMAI	CTGCAG	1 cut(s)	241
BspPI	GGATC	1 cut(s)	379
BspT107I	GGYRCC	1 cut(s)	574
BsrGI	TGTACA	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	640
BssECI	CCNNGG	2 cut(s)	104, 168
BssMI	GATC	1 cut(s)	384
BssT1I	CCWWGG	2 cut(s)	104, 168
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	553
BstAUI	TGTACA	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	684
BstDEI	CTNAG	3 cut(s)	397, 627, 690
BstDSI	CCRYGG	1 cut(s)	104
BstENI	CCTNNNNNAGG	1 cut(s)	715
BstF5I	GGATG	1 cut(s)	409
BstKTI	GATC	1 cut(s)	387
BstMBI	GATC	1 cut(s)	384
BstMWI	GCNNNNNNNGC	1 cut(s)	745
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BstSFI	CTRYAG	2 cut(s)	237, 549
BstV1I	GCAGC	1 cut(s)	251
BstV2I	GAAGAC	2 cut(s)	116, 728
BstXI	CCANNNNNNTGG	2 cut(s)	94, 529
BtgI	CCRYGG	1 cut(s)	104
BtsCI	GGATG	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	684
CciI	TCATGA	2 cut(s)	258, 346
Cfr13I	GGNCC	1 cut(s)	268
CsiI	ACCWGGT	1 cut(s)	319
Csp6I	GTAC	4 cut(s)	25, 38, 337, 352
CviAII	CATG	9 cut(s)	105, 149, 248, 259, 284, 347, 466, 508, 621
CviJI	RGCY	9 cut(s)	78, 124, 144, 165, 173, 196, 242, 311, 686
CviKI_1	RGCY	9 cut(s)	78, 124, 144, 165, 173, 196, 242, 311, 686
CviQI	GTAC	4 cut(s)	25, 38, 337, 352
DdeI	CTNAG	3 cut(s)	397, 627, 690
DpnI	GATC	1 cut(s)	386
DpnII	GATC	1 cut(s)	384
EciI	GGCGGA	1 cut(s)	346
Eco130I	CCWWGG	2 cut(s)	104, 168
Eco24I	GRGCYC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	409
EcoNI	CCTNNNNNAGG	1 cut(s)	715
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	2 cut(s)	104, 168
EcoT38I	GRGCYC	1 cut(s)	146
ErhI	CCWWGG	2 cut(s)	104, 168
FaeI	CATG	9 cut(s)	108, 152, 251, 262, 287, 350, 469, 511, 624
FatI	CATG	9 cut(s)	104, 148, 247, 258, 283, 346, 465, 507, 620
FblI	GTMKAC	1 cut(s)	562
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	1 cut(s)	416
FriOI	GRGCYC	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	1 cut(s)	461
GluI	GCNGC	1 cut(s)	240
Hin1II	CATG	9 cut(s)	108, 152, 251, 262, 287, 350, 469, 511, 624
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	3 cut(s)	470, 511, 658
HpaI	GTTAAC	1 cut(s)	253
HphI	GGTGA	3 cut(s)	109, 385, 454
Hpy166II	GTNNAC	3 cut(s)	100, 253, 563
Hpy188I	TCNGA	3 cut(s)	63, 384, 630
Hpy188III	TCNNGA	4 cut(s)	259, 347, 515, 662
Hpy8I	GTNNAC	3 cut(s)	100, 253, 563
HpyAV	CCTTC	1 cut(s)	322
HpyCH4III	ACNGT	1 cut(s)	553
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	5 cut(s)	191, 239, 362, 407, 490
HpyF10VI	GCNNNNNNNGC	1 cut(s)	745
HpyF3I	CTNAG	3 cut(s)	397, 627, 690
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	9 cut(s)	108, 152, 251, 262, 287, 350, 469, 511, 624
KspAI	GTTAAC	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	384
LmnI	GCTCC	2 cut(s)	170, 308
Lsp1109I	GCAGC	1 cut(s)	251
LweI	GCATC	3 cut(s)	394, 726, 735
MabI	ACCWGGT	1 cut(s)	319
MaeI	CTAG	1 cut(s)	461
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	3 cut(s)	642, 669, 693
MalI	GATC	1 cut(s)	386
MboI	GATC	1 cut(s)	384
MboII	GAAGA	3 cut(s)	62, 121, 733
MhlI	GDGCHC	2 cut(s)	146, 460
MluCI	AATT	3 cut(s)	229, 484, 599
MnlI	CCTC	6 cut(s)	253, 321, 354, 688, 697, 711
MseI	TTAA	2 cut(s)	228, 252
MslI	CAYNNNNRTG	2 cut(s)	398, 527
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	745
NcoI	CCATGG	1 cut(s)	104
NdeII	GATC	1 cut(s)	384
NlaIII	CATG	9 cut(s)	108, 152, 251, 262, 287, 350, 469, 511, 624
NlaIV	GGNNCC	3 cut(s)	166, 310, 576
OliI	CACNNNNGTG	1 cut(s)	398
PagI	TCATGA	2 cut(s)	258, 346
PfeI	GAWTC	3 cut(s)	470, 511, 658
PkrI	GCNGC	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	3 cut(s)	166, 310, 576
PspPI	GGNCC	1 cut(s)	268
PstI	CTGCAG	1 cut(s)	241
RsaI	GTAC	4 cut(s)	26, 39, 338, 353
RsaNI	GTAC	4 cut(s)	25, 38, 337, 352
RseI	CAYNNNNRTG	2 cut(s)	398, 527
SaqAI	TTAA	2 cut(s)	228, 252
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	1 cut(s)	384
Sau96I	GGNCC	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	321
SduI	GDGCHC	2 cut(s)	146, 460
SetI	ASST	9 cut(s)	126, 198, 325, 346, 357, 398, 568, 708, 713
SexAI	ACCWGGT	1 cut(s)	319
SfaNI	GCATC	3 cut(s)	394, 726, 735
SfcI	CTRYAG	2 cut(s)	237, 549
SinI	GGWCC	1 cut(s)	268
SmiMI	CAYNNNNRTG	2 cut(s)	398, 527
Sse9I	AATT	3 cut(s)	229, 484, 599
SsiI	CCGC	1 cut(s)	331
SspI	AATATT	1 cut(s)	501
SspMI	CTAG	1 cut(s)	461
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	2 cut(s)	104, 168
TaaI	ACNGT	1 cut(s)	553
TaiI	ACGT	1 cut(s)	357
TasI	AATT	3 cut(s)	229, 484, 599
TatI	WGTACW	1 cut(s)	37
TfiI	GAWTC	3 cut(s)	470, 511, 658
Tru1I	TTAA	2 cut(s)	228, 252
Tru9I	TTAA	2 cut(s)	228, 252
TseI	GCWGC	1 cut(s)	239
TspDTI	ATGAA	5 cut(s)	247, 272, 304, 524, 609
VpaK11BI	GGWCC	1 cut(s)	268
XagI	CCTNNNNNAGG	1 cut(s)	715
XcmI	CCANNNNNNNNNTGG	3 cut(s)	91, 166, 760
XmiI	GTMKAC	1 cut(s)	562
XspI	CTAG	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.