RchiOBHm_Chr3g0469841

ribosomal protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
N/A
Physical Location & Seq
Reverse (-)
15769893 .. 15770409
517 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 267 bp
ATGTACAACGCAGAAAAGAGGGGCAAGAGACAGTTCATGATCAGGCCTTCGTCCAAGTTCCTTATCGTTATGCAGAAGCACGCTACTTATCTGATTATGGGTTCTGAAGCTGGCTATTATTTTGAGTATGTTGATGACCACAGATCTGGAAAGATTGTGGTTGAACTCAATGGGAGGCTGAACAAGTGTGGGGTTATCAGTCCTCGCTTTGATGTTGGTGTCAAGGAGATTGAAGGCTGGACGGCTAGACTTCTTCCGTCAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

88

Amino Acids

10.18

Weight (kDa)

9.72

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 126
AfaI GTAC 1 cut(s) 5
AgsI TTSAA 2 cut(s) 164, 233
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
Alw26I GTCTC 1 cut(s) 22
AoxI GGCC 1 cut(s) 44
BceAI ACGGC 1 cut(s) 258
BclI TGATCA 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 22
BfaI CTAG 1 cut(s) 246
BglII AGATCT 1 cut(s) 143
BshFI GGCC 1 cut(s) 46
BsmAI GTCTC 1 cut(s) 22
BsnI GGCC 1 cut(s) 46
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 39, 143
BspANI GGCC 1 cut(s) 46
BspHI TCATGA 1 cut(s) 36
BsrGI TGTACA 1 cut(s) 3
BssMI GATC 2 cut(s) 39, 143
Bst4CI ACNGT 1 cut(s) 33
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 81, 112
BstKTI GATC 2 cut(s) 42, 146
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 2 cut(s) 39, 143
BstX2I RGATCY 1 cut(s) 143
BstXI CCANNNNNNTGG 1 cut(s) 146
BstYI RGATCY 1 cut(s) 143
BsuRI GGCC 1 cut(s) 46
Cac8I GCNNGC 2 cut(s) 81, 112
CciI TCATGA 1 cut(s) 36
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 37
CviJI RGCY 6 cut(s) 46, 110, 114, 178, 237, 245
CviKI_1 RGCY 6 cut(s) 46, 110, 114, 178, 237, 245
CviQI GTAC 1 cut(s) 4
DpnI GATC 2 cut(s) 41, 145
DpnII GATC 2 cut(s) 39, 143
Eco147I AGGCCT 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 126
FaeI CATG 1 cut(s) 40
FaiI YATR 4 cut(s) 38, 71, 98, 129
FatI CATG 1 cut(s) 36
FbaI TGATCA 1 cut(s) 39
FspBI CTAG 1 cut(s) 246
HaeIII GGCC 1 cut(s) 46
Hin1II CATG 1 cut(s) 40
Hpy188I TCNGA 2 cut(s) 93, 106
Hpy188III TCNNGA 3 cut(s) 37, 147, 261
HpyAV CCTTC 2 cut(s) 57, 227
HpyCH4III ACNGT 1 cut(s) 33
HpyCH4V TGCA 1 cut(s) 73
Hsp92II CATG 1 cut(s) 40
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 2 cut(s) 39, 143
LpnPI CCDG 4 cut(s) 28, 96, 132, 223
MaeI CTAG 1 cut(s) 246
MalI GATC 2 cut(s) 41, 145
MboI GATC 2 cut(s) 39, 143
MboII GAAGA 1 cut(s) 245
MflI RGATCY 1 cut(s) 143
MnlI CCTC 3 cut(s) 12, 168, 213
NdeII GATC 2 cut(s) 39, 143
NlaIII CATG 1 cut(s) 40
PagI TCATGA 1 cut(s) 36
PceI AGGCCT 1 cut(s) 46
PsuI RGATCY 1 cut(s) 143
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
Sau3AI GATC 2 cut(s) 39, 143
SetI ASST 1 cut(s) 112
SseBI AGGCCT 1 cut(s) 46
SspMI CTAG 1 cut(s) 246
StuI AGGCCT 1 cut(s) 46
TaaI ACNGT 1 cut(s) 33
TatI WGTACW 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 25
TspGWI ACGGA 1 cut(s) 246
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.