RchiOBHm_Chr3g0474141

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
N/A
Physical Location & Seq
Forward (+)
19878746 .. 19880680
1935 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1470 bp
ATGGAAGACAGGGGGAAGCGTAAGTTGTTGGCCACTGCAAGTTGTCAAGGCCAAGCAGTTAGAGCTGTTACCGAGGGTTTAATTGATAGGCTGAGTAATCTTCCAGACCATGTTGCTCATCACATTCTGTCATTCCTTGCTATTGAAGACCTTACTCGTTTCGGATGTGTGTCCAAAGGATATGGTGAATTGTATTTGTCAGCTCCGTCGTACTTGTTTCATCGTGGGGTTAATAGGATAGCGCGCTTTCATTTTCACTGGAACCTTGATATACACCAACCAAAAATCTTTCGTGAAGATGAGAGATTTCGTTTGGACAAATGGATCTACAATGCCATAAGGTGTAACGTTGAAGTCCTTGATATTAACATCGAGAATTCGTGTCTGGAGGCACCGCCCTTACCTTTTTGCATCTTTCTGTGTGGATCTTTAAAATCTCTAGTGGTCGAGATGTATTGTAAAATTTCTAAAGCACCCTCACTTGCTTCTCTCTCCAATCTGGAATGCTTGAAATTGCAAGATGTTATCATACTAGATGAGGGGTTTTTCAAATGGATCTCATGTTCATGCAAATGCATTAAGGAATTGTCTCTTATACATGTTCATGGGAATGGGGGAATGCATTTCACTATTGAAAGCTCATCTTTGGAATCATTGTGCATTAAGTGGGTATATGGTATGTTCCATCTTAACATCTCAGGTCAGAAGCTTAGAAAAATAATTATTAACTGGATTTTTGCATATCGTACGGACAGCCCACATACAGATATATGTTTGAGGAATCAACTTAATCTGGGAAGATTGGAAAGTTTAGAAGAAGCTGAGATTTGTCTTCTGAATCATGATGACTTTGTCATCGTATCTGAGGTTCTTTGCTGCTTATGCAGTGCTAAAGTTCTTATACTGAACAAAGAGATTACAATGATTCTAGTCCCTGCAATGACCTCTCTTTTGGGAGGAATGTCTAAGTTGAGTACGTTGATCATAAAGTCTAACCCATTCTTCCGTGGTCCTAAAGCTGATGTAAGTAAAAGTAGGCTCTCTCCAATTTCTTCTTCTTCTTCTTTATTTTTCTTGAATAGGAGTAAGTTAATCACACTTACAATAACATTGCGGTCTTATTATGGCAAACTATTTTGGAAATTTTCAATTGATTTGCCTGTTGAATTGTTGCCTTCTCAGTGTTGTGGGTTTAATATAGGATACTGGAAGCTGCAAAACGCTGCTTTTATTTATCAGCTTAAGGAGGTTACCATAGAGCTCTCCCATGGGTCTAATGGAATCGAGTTTGCTAGATATATTCTTGAACATGCTCAGAATTTGATTAAGATGACTATTGTGCATTCTCCCCGGCAGTCTAATGCTATGAGGAAGTTAAATACAAGCAAGATGACTTCCAATATCACACTTGACTTTCAGGAAGATCAAAGAAGAGGACCTCAGAAGCAAAGAGGAAGAAGGGTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

489

Amino Acids

55.72

Weight (kDa)

8.93

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 105 - 271 1.4e-08 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 391
AccII CGCG 1 cut(s) 244
AciI CCGC 2 cut(s) 395, 1114
AclI AACGTT 1 cut(s) 348
AclWI GGATC 3 cut(s) 332, 433, 563
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 4 cut(s) 376, 462, 1142, 1318
AfaI GTAC 3 cut(s) 212, 748, 976
AflII CTTAAG 1 cut(s) 1241
AflIII ACRYGT 1 cut(s) 598
AgsI TTSAA 9 cut(s) 146, 353, 511, 550, 635, 1078, 1149, 1166, 1307
AjuI GAANNNNNNNTTGG 2 cut(s) 1039, 1071
AloI GAACNNNNNNTCC 2 cut(s) 547, 579
AluBI AGCT 9 cut(s) 65, 203, 639, 709, 821, 1019, 1213, 1240, 1261
AluI AGCT 9 cut(s) 65, 203, 639, 709, 821, 1019, 1213, 1240, 1261
Alw21I GWGCWC 1 cut(s) 1263
Alw26I GTCTC 1 cut(s) 594
AlwI GGATC 3 cut(s) 332, 433, 563
AoxI GGCC 2 cut(s) 30, 49
ApeKI GCWGC 3 cut(s) 876, 1213, 1223
ApoI RAATTY 4 cut(s) 376, 462, 1142, 1318
ArsI GACNNNNNNTTYG 2 cut(s) 934, 966
AspLEI GCGC 2 cut(s) 244, 246
AspS9I GGNCC 2 cut(s) 1010, 1436
AsuC2I CCSGG 1 cut(s) 1351
AsuHPI GGTGA 1 cut(s) 197
AvaII GGWCC 2 cut(s) 1010, 1436
BalI TGGCCA 1 cut(s) 32
BanI GGYRCC 1 cut(s) 391
BanII GRGCYC 1 cut(s) 1263
BbsI GAAGAC 3 cut(s) 12, 153, 824
Bbv12I GWGCWC 1 cut(s) 1263
BbvI GCAGC 3 cut(s) 863, 1200, 1210
BccI CCATC 1 cut(s) 693
BciVI GTATCC 1 cut(s) 1196
BclI TGATCA 1 cut(s) 981
BcnI CCSGG 1 cut(s) 1351
BcoDI GTCTC 1 cut(s) 594
BfaI CTAG 4 cut(s) 440, 533, 929, 1293
BfrI CTTAAG 1 cut(s) 1241
BfuI GTATCC 1 cut(s) 1196
BisI GCNGC 3 cut(s) 877, 1214, 1224
BlsI GCNGC 3 cut(s) 878, 1215, 1225
Bme1390I CCNGG 1 cut(s) 1351
Bme18I GGWCC 2 cut(s) 1010, 1436
BmgT120I GGNCC 2 cut(s) 1010, 1436
BmiI GGNNCC 2 cut(s) 263, 393
BmrFI CCNGG 1 cut(s) 1351
BmsI GCATC 1 cut(s) 420
BpiI GAAGAC 3 cut(s) 12, 153, 824
BpmI CTGGAG 1 cut(s) 407
BpuMI CCSGG 1 cut(s) 1351
BsaJI CCNNGG 4 cut(s) 72, 1006, 1267, 1349
Bse1I ACTGG 3 cut(s) 263, 734, 1211
Bse3DI GCAATG 2 cut(s) 945, 1109
BseDI CCNNGG 4 cut(s) 72, 1006, 1267, 1349
BseGI GGATG 1 cut(s) 170
BseMI GCAATG 2 cut(s) 945, 1109
BseMII CTCAG 7 cut(s) 83, 711, 813, 855, 1193, 1328, 1454
BseNI ACTGG 3 cut(s) 263, 734, 1211
BsePI GCGCGC 1 cut(s) 242
BseXI GCAGC 3 cut(s) 863, 1200, 1210
Bsh1236I CGCG 1 cut(s) 244
BshFI GGCC 2 cut(s) 32, 51
BshNI GGYRCC 1 cut(s) 391
BsiHKAI GWGCWC 1 cut(s) 1263
BsiSI CCGG 1 cut(s) 1351
BsiWI CGTACG 1 cut(s) 746
BslFI GGGAC 1 cut(s) 917
BsmAI GTCTC 1 cut(s) 594
BsmFI GGGAC 1 cut(s) 917
BsmI GAATGC 3 cut(s) 509, 624, 1342
BsnI GGCC 2 cut(s) 32, 51
Bsp1286I GDGCHC 1 cut(s) 1263
Bsp143I GATC 5 cut(s) 324, 425, 555, 981, 1423
Bsp19I CCATGG 1 cut(s) 1267
BspACI CCGC 2 cut(s) 395, 1114
BspANI GGCC 2 cut(s) 32, 51
BspCNI CTCAG 7 cut(s) 84, 710, 814, 856, 1192, 1327, 1453
BspFNI CGCG 1 cut(s) 244
BspHI TCATGA 1 cut(s) 841
BspLI GGNNCC 2 cut(s) 263, 393
BspPI GGATC 3 cut(s) 332, 433, 563
BspT107I GGYRCC 1 cut(s) 391
BspTI CTTAAG 1 cut(s) 1241
BsrDI GCAATG 2 cut(s) 945, 1109
BsrI ACTGG 3 cut(s) 263, 734, 1211
BssECI CCNNGG 4 cut(s) 72, 1006, 1267, 1349
BssHII GCGCGC 1 cut(s) 242
BssMI GATC 5 cut(s) 324, 425, 555, 981, 1423
BssT1I CCWWGG 1 cut(s) 1267
Bst6I CTCTTC 1 cut(s) 1426
BstAFI CTTAAG 1 cut(s) 1241
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 9 cut(s) 92, 697, 710, 822, 864, 966, 1179, 1314, 1440
BstDSI CCRYGG 2 cut(s) 1006, 1267
BstEII GGTNACC 1 cut(s) 1249
BstF5I GGATG 1 cut(s) 170
BstFNI CGCG 1 cut(s) 244
BstHHI GCGC 2 cut(s) 244, 246
BstKTI GATC 5 cut(s) 327, 428, 558, 984, 1426
BstMAI GTCTC 1 cut(s) 594
BstMBI GATC 5 cut(s) 324, 425, 555, 981, 1423
BstMWI GCNNNNNNNGC 2 cut(s) 62, 882
BstNSI RCATGY 2 cut(s) 602, 1313
BstPI GGTNACC 1 cut(s) 1249
BstSCI CCNGG 1 cut(s) 1349
BstUI CGCG 1 cut(s) 244
BstV1I GCAGC 3 cut(s) 863, 1200, 1210
BstV2I GAAGAC 3 cut(s) 12, 153, 824
BstX2I RGATCY 3 cut(s) 324, 425, 555
BstYI RGATCY 3 cut(s) 324, 425, 555
BsuI GTATCC 1 cut(s) 1196
BsuRI GGCC 2 cut(s) 32, 51
BtgI CCRYGG 2 cut(s) 1006, 1267
BtsCI GGATG 1 cut(s) 170
BtsI GCAGTG 2 cut(s) 33, 892
BtsIMutI CAGTG 4 cut(s) 33, 256, 892, 1187
Cac8I GCNNGC 1 cut(s) 244
CciI TCATGA 1 cut(s) 841
CfoI GCGC 2 cut(s) 244, 246
Cfr13I GGNCC 2 cut(s) 1010, 1436
Csp6I GTAC 3 cut(s) 211, 747, 975
CviAII CATG 8 cut(s) 110, 561, 567, 599, 605, 842, 1268, 1310
CviQI GTAC 3 cut(s) 211, 747, 975
DdeI CTNAG 9 cut(s) 92, 697, 710, 822, 864, 966, 1179, 1314, 1440
DpnI GATC 5 cut(s) 326, 427, 557, 983, 1425
DpnII GATC 5 cut(s) 324, 425, 555, 981, 1423
DraI TTTAAA 1 cut(s) 432
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 1426
EarI CTCTTC 1 cut(s) 1426
Ecl136II GAGCTC 1 cut(s) 1261
Eco130I CCWWGG 1 cut(s) 1267
Eco24I GRGCYC 1 cut(s) 1263
Eco47I GGWCC 2 cut(s) 1010, 1436
Eco53kI GAGCTC 1 cut(s) 1261
Eco91I GGTNACC 1 cut(s) 1249
EcoICRI GAGCTC 1 cut(s) 1261
EcoO109I RGGNCCY 1 cut(s) 1436
EcoO65I GGTNACC 1 cut(s) 1249
EcoRI GAATTC 1 cut(s) 376
EcoT14I CCWWGG 1 cut(s) 1267
EcoT22I ATGCAT 2 cut(s) 578, 624
EcoT38I GRGCYC 1 cut(s) 1263
ErhI CCWWGG 1 cut(s) 1267
FaeI CATG 8 cut(s) 113, 564, 570, 602, 608, 845, 1271, 1313
FalI AAGNNNNNCTT 2 cut(s) 628, 660
FaqI GGGAC 1 cut(s) 917
FatI CATG 8 cut(s) 109, 560, 566, 598, 604, 841, 1267, 1309
FbaI TGATCA 1 cut(s) 981
Fnu4HI GCNGC 3 cut(s) 877, 1214, 1224
FokI GGATG 1 cut(s) 177
FriOI GRGCYC 1 cut(s) 1263
Fsp4HI GCNGC 3 cut(s) 877, 1214, 1224
FspBI CTAG 4 cut(s) 440, 533, 929, 1293
GlaI GCGC 2 cut(s) 243, 245
GluI GCNGC 3 cut(s) 877, 1214, 1224
GsuI CTGGAG 1 cut(s) 407
HaeIII GGCC 2 cut(s) 32, 51
HapII CCGG 1 cut(s) 1351
HhaI GCGC 2 cut(s) 244, 246
Hin1II CATG 8 cut(s) 113, 564, 570, 602, 608, 845, 1271, 1313
Hin6I GCGC 2 cut(s) 242, 244
HinP1I GCGC 2 cut(s) 242, 244
HindIII AAGCTT 1 cut(s) 707
HinfI GANTC 5 cut(s) 650, 781, 838, 925, 1281
HpaII CCGG 1 cut(s) 1351
HphI GGTGA 1 cut(s) 197
Hpy188I TCNGA 7 cut(s) 164, 705, 837, 865, 1317, 1443, 1469
Hpy99I CGWCG 1 cut(s) 211
HpyAV CCTTC 2 cut(s) 1185, 1452
HpyCH4IV ACGT 2 cut(s) 348, 977
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 882
HpyF3I CTNAG 9 cut(s) 92, 697, 710, 822, 864, 966, 1179, 1314, 1440
HpySE526I ACGT 2 cut(s) 348, 977
Hsp92II CATG 8 cut(s) 113, 564, 570, 602, 608, 845, 1271, 1313
HspAI GCGC 2 cut(s) 242, 244
Ksp22I TGATCA 1 cut(s) 981
Kzo9I GATC 5 cut(s) 324, 425, 555, 981, 1423
LmnI GCTCC 1 cut(s) 208
Lsp1109I GCAGC 3 cut(s) 863, 1200, 1210
LweI GCATC 1 cut(s) 420
MaeI CTAG 4 cut(s) 440, 533, 929, 1293
MaeII ACGT 2 cut(s) 348, 977
MaeIII GTNAC 3 cut(s) 67, 344, 1249
MalI GATC 5 cut(s) 326, 427, 557, 983, 1425
MboI GATC 5 cut(s) 324, 425, 555, 981, 1423
MfeI CAATTG 1 cut(s) 1149
MflI RGATCY 3 cut(s) 324, 425, 555
MhlI GDGCHC 1 cut(s) 1263
MlsI TGGCCA 1 cut(s) 32
MluNI TGGCCA 1 cut(s) 32
Mox20I TGGCCA 1 cut(s) 32
Mph1103I ATGCAT 2 cut(s) 578, 624
MscI TGGCCA 1 cut(s) 32
MslI CAYNNNNRTG 4 cut(s) 565, 571, 603, 609
Msp20I TGGCCA 1 cut(s) 32
MspCI CTTAAG 1 cut(s) 1241
MspI CCGG 1 cut(s) 1351
MspR9I CCNGG 1 cut(s) 1351
MunI CAATTG 1 cut(s) 1149
Mva1269I GAATGC 3 cut(s) 509, 624, 1342
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 2 cut(s) 62, 882
NciI CCSGG 1 cut(s) 1351
NcoI CCATGG 1 cut(s) 1267
NdeII GATC 5 cut(s) 324, 425, 555, 981, 1423
NlaIII CATG 8 cut(s) 113, 564, 570, 602, 608, 845, 1271, 1313
NlaIV GGNNCC 2 cut(s) 263, 393
NsiI ATGCAT 2 cut(s) 578, 624
NspI RCATGY 2 cut(s) 602, 1313
PagI TCATGA 1 cut(s) 841
PauI GCGCGC 1 cut(s) 242
PciI ACATGT 1 cut(s) 598
PctI GAATGC 3 cut(s) 509, 624, 1342
PfeI GAWTC 5 cut(s) 650, 781, 838, 925, 1281
Pfl23II CGTACG 1 cut(s) 746
PflFI GACNNNGTC 1 cut(s) 851
PkrI GCNGC 3 cut(s) 878, 1215, 1225
PpuMI RGGWCCY 1 cut(s) 1436
PscI ACATGT 1 cut(s) 598
Psp124BI GAGCTC 1 cut(s) 1263
Psp1406I AACGTT 1 cut(s) 348
Psp5II RGGWCCY 1 cut(s) 1436
PspEI GGTNACC 1 cut(s) 1249
PspLI CGTACG 1 cut(s) 746
PspN4I GGNNCC 2 cut(s) 263, 393
PspPI GGNCC 2 cut(s) 1010, 1436
PspPPI RGGWCCY 1 cut(s) 1436
PsrI GAACNNNNNNTAC 2 cut(s) 852, 884
PsuI RGATCY 3 cut(s) 324, 425, 555
PsyI GACNNNGTC 1 cut(s) 851
PteI GCGCGC 1 cut(s) 242
RsaI GTAC 3 cut(s) 212, 748, 976
RsaNI GTAC 3 cut(s) 211, 747, 975
RseI CAYNNNNRTG 4 cut(s) 565, 571, 603, 609
SacI GAGCTC 1 cut(s) 1263
SatI GCNGC 3 cut(s) 877, 1214, 1224
Sau3AI GATC 5 cut(s) 324, 425, 555, 981, 1423
Sau96I GGNCC 2 cut(s) 1010, 1436
ScrFI CCNGG 1 cut(s) 1351
SduI GDGCHC 1 cut(s) 1263
SfaNI GCATC 1 cut(s) 420
SinI GGWCC 2 cut(s) 1010, 1436
SmiMI CAYNNNNRTG 4 cut(s) 565, 571, 603, 609
SmlI CTYRAG 1 cut(s) 1241
SmoI CTYRAG 1 cut(s) 1241
SsiI CCGC 2 cut(s) 395, 1114
SspMI CTAG 4 cut(s) 440, 533, 929, 1293
SstI GAGCTC 1 cut(s) 1263
StyD4I CCNGG 1 cut(s) 1349
StyI CCWWGG 1 cut(s) 1267
TaiI ACGT 2 cut(s) 351, 980
TaqI TCGA 3 cut(s) 372, 447, 1284
TfiI GAWTC 5 cut(s) 650, 781, 838, 925, 1281
TscAI CASTG 4 cut(s) 40, 263, 892, 1187
TseI GCWGC 3 cut(s) 876, 1213, 1223
TspDTI ATGAA 4 cut(s) 209, 239, 555, 593
TspGWI ACGGA 3 cut(s) 195, 764, 995
TspRI CASTG 4 cut(s) 40, 263, 892, 1187
Tth111I GACNNNGTC 1 cut(s) 851
Vha464I CTTAAG 1 cut(s) 1241
VpaK11BI GGWCC 2 cut(s) 1010, 1436
XapI RAATTY 4 cut(s) 376, 462, 1142, 1318
XceI RCATGY 2 cut(s) 602, 1313
XcmI CCANNNNNNNNNTGG 1 cut(s) 1274
XspI CTAG 4 cut(s) 440, 533, 929, 1293
Zsp2I ATGCAT 2 cut(s) 578, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.