RchiOBHm_Chr3g0476261

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
N/A
Physical Location & Seq
Reverse (-)
22219095 .. 22224197
5103 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 321 bp
ATGCTGCAAAAAGATCCTTTGCTGGTGATTCTTTTAGTTGTTAAAGTTTTTGAAGGATGGAAAGATACAAACTGTAATGGATCAGAAAAATCATTCTGTTGGGATAACTTTTTATCACCAGTAACCATGCAGATGATGGAGGATATGAGGGTGCAGTTTGTAGATCTATTATCAAACATTGGTTTTGTCGACAAATCCAGGGGTGCTAATGCTTACAACCAATACAGCCATGACTTGGAGATGGTGTCTGCAATTCTTTGTGCTGGGCTTTACCCAAATGTTGTGCAGTGTAAAAGAAGAGGAAAGTGGACAGCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0001503 GO:0001817 GO:0001819 GO:0002151 GO:0002791 GO:0002793 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010638 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032479 GO:0032481 GO:0032501 GO:0032647 GO:0032727 GO:0032879 GO:0032880 GO:0033043 GO:0033044 GO:0034641 GO:0042623 GO:0042826 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043489 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050707 GO:0050708 GO:0050714 GO:0050715 GO:0050789 GO:0050794 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051222 GO:0051223 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051254 GO:0051880 GO:0060255 GO:0065007 GO:0065008 GO:0070034 GO:0070035 GO:0070201 GO:0071704 GO:0080090 GO:0090087 GO:0090304 GO:0090669 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902369 GO:1902680 GO:1902739 GO:1902741 GO:1903506 GO:1903508 GO:1903530 GO:1903532 GO:1904951 GO:1990837 GO:2000112 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

106

Amino Acids

12.15

Weight (kDa)

6.54

Isoelectric Point (pI)

24.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 235
AccI GTMKAC 1 cut(s) 189
AclWI GGATC 2 cut(s) 8, 88
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 1 cut(s) 53
AjnI CCWGG 1 cut(s) 197
AlwI GGATC 2 cut(s) 8, 88
ApeKI GCWGC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 37, 108
BccI CCATC 3 cut(s) 51, 130, 235
BciT130I CCWGG 1 cut(s) 199
BglII AGATCT 1 cut(s) 163
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 199
BsaJI CCNNGG 1 cut(s) 198
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 119
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 62
BseLI CCNNNNNNNGG 1 cut(s) 235
BseNI ACTGG 1 cut(s) 119
BseYI CCCAGC 1 cut(s) 263
BsgI GTGCAG 2 cut(s) 173, 305
BslI CCNNNNNNNGG 1 cut(s) 235
BsmI GAATGC 1 cut(s) 314
Bsp143I GATC 3 cut(s) 13, 80, 163
BspPI GGATC 2 cut(s) 8, 88
BsrI ACTGG 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 3 cut(s) 13, 80, 163
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 1 cut(s) 74
Bst6I CTCTTC 1 cut(s) 292
BstF5I GGATG 1 cut(s) 62
BstKTI GATC 3 cut(s) 16, 83, 166
BstMBI GATC 3 cut(s) 13, 80, 163
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 197
BstX2I RGATCY 2 cut(s) 13, 163
BstYI RGATCY 2 cut(s) 13, 163
BtsCI GGATG 1 cut(s) 62
BtsI GCAGTG 1 cut(s) 293
BtsIMutI CAGTG 1 cut(s) 293
CviAII CATG 2 cut(s) 127, 230
CviJI RGCY 2 cut(s) 228, 268
CviKI_1 RGCY 2 cut(s) 228, 268
DpnI GATC 3 cut(s) 15, 82, 165
DpnII GATC 3 cut(s) 13, 80, 163
Eam1104I CTCTTC 1 cut(s) 292
EarI CTCTTC 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 197
FaeI CATG 2 cut(s) 130, 233
FaiI YATR 3 cut(s) 128, 146, 231
FatI CATG 2 cut(s) 126, 229
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
GsaI CCCAGC 1 cut(s) 267
Hin1II CATG 2 cut(s) 130, 233
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 1 cut(s) 28
HphI GGTGA 2 cut(s) 37, 108
Hpy166II GTNNAC 2 cut(s) 190, 309
Hpy188I TCNGA 1 cut(s) 85
Hpy8I GTNNAC 2 cut(s) 190, 309
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4V TGCA 5 cut(s) 7, 130, 154, 251, 286
Hsp92II CATG 2 cut(s) 130, 233
Kzo9I GATC 3 cut(s) 13, 80, 163
LpnPI CCDG 5 cut(s) 8, 132, 184, 211, 249
MaeIII GTNAC 1 cut(s) 121
MalI GATC 3 cut(s) 15, 82, 165
MboI GATC 3 cut(s) 13, 80, 163
MboII GAAGA 1 cut(s) 309
MflI RGATCY 2 cut(s) 13, 163
MluCI AATT 1 cut(s) 252
MnlI CCTC 3 cut(s) 133, 141, 293
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 199
Mva1269I GAATGC 1 cut(s) 314
MvaI CCWGG 1 cut(s) 199
NdeII GATC 3 cut(s) 13, 80, 163
NlaIII CATG 2 cut(s) 130, 233
PctI GAATGC 1 cut(s) 314
PfeI GAWTC 1 cut(s) 28
PflMI CCANNNNNTGG 1 cut(s) 235
PkrI GCNGC 1 cut(s) 6
Psp6I CCWGG 1 cut(s) 197
PspFI CCCAGC 1 cut(s) 263
PspGI CCWGG 1 cut(s) 197
PsuI RGATCY 2 cut(s) 13, 163
RseI CAYNNNNRTG 1 cut(s) 131
SalI GTCGAC 1 cut(s) 188
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 3 cut(s) 13, 80, 163
ScrFI CCNGG 1 cut(s) 199
SgeI CNNG 8 cut(s) 35, 131, 139, 210, 211, 242, 247, 276
SmiMI CAYNNNNRTG 1 cut(s) 131
Sse9I AATT 1 cut(s) 252
StyD4I CCNGG 1 cut(s) 197
TaaI ACNGT 1 cut(s) 74
TaqI TCGA 1 cut(s) 189
TasI AATT 1 cut(s) 252
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 1 cut(s) 293
TseI GCWGC 1 cut(s) 4
TspRI CASTG 1 cut(s) 293
Van91I CCANNNNNTGG 1 cut(s) 235
XcmI CCANNNNNNNNNTGG 1 cut(s) 133
XmiI GTMKAC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.